PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G129500.1

Common Name

B456_001G129500, LOC105793426

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 325aa MW: 36211 Da PI: 8.3821

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G129500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.4	8.7e-40	96	157	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprC+stntkfCyynnyslsqPryfCk+CrryWtkGG lrnvPvGgg+rknk+sss Gorai.001G129500.1 96 PEEALKCPRCESTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGNLRNVPVGGGCRKNKRSSS 157 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	82	154	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.5E-34	98	154	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.339	100	154	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	102	138	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MGGRASGLYI LRSVGGDAIL LLSLSFELFR PKTKTLFFTT ISLYRRIRLL NFAFLFVACM 60 DPSRGLHQEM GNPFSENMMV NSKGQQQQER KARPQPEEAL KCPRCESTNT KFCYYNNYSL 120 SQPRYFCKSC RRYWTKGGNL RNVPVGGGCR KNKRSSSKRT QDHAFTPSTN PLITPHHHPI 180 PPLTYDMDTN DLTLAFATVQ KQSTSGQQLG FDDHDGDLSI FGNPSFNGNA LTSSFLGNHG 240 NLQSYCYDNI GMGGAATGLN GETMLPYNNQ EMIDSTMAMG QDSENRVLWG LPWQLIAADN 300 NMVGLGDLDL VRDNWNGLLN TPLM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012477794.1	0.0	PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBL	A0A0D2LY51	0.0	A0A0D2LY51_GOSRA; Uncharacterized protein
STRING	Gorai.001G129500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6960	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	9e-47	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G129500.1
Entrez Gene	105793426

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]