PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G127000.1

Common Name

B456_001G127000, LOC105793166

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

YABBY

Protein Properties

Length: 184aa MW: 20436.9 Da PI: 8.2201

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G127000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	225.7	1.3e-69	2	157	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 +++ +se+v yv+CnfCntilavsvP +s f++vtvrCGhC++llsvn+ ++ q++++++ ++++ +e++ ++ ++ s+ Gorai.001G127000.1 2 SMDLTSERVWYVHCNFCNTILAVSVPCNSAFNIVTVRCGHCANLLSVNMGTSLQTVPSQDA--------QKQQITIDEDHSNKECGSS-SK 83 66789***************************************************996........3333333333333222222.22 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ s+ +++++e++r+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Gorai.001G127000.1 84 CNKFSA---VDSTEQEATRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 157 222222...3567788999999.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.9E-73	6	157	IPR006780	YABBY protein
SuperFamily	SSF47095	1.7E-8	101	150	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.6E-5	105	151	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MSMDLTSERV WYVHCNFCNT ILAVSVPCNS AFNIVTVRCG HCANLLSVNM GTSLQTVPSQ 60 DAQKQQITID EDHSNKECGS SSKCNKFSAV DSTEQEATRM PPIRPPEKRQ RVPSAYNRFI 120 KEEIQRIKAS NPDISHREAF STAAKNWAHF PHIHFGLKLD GSKQAKLDQG YADQGSQKSN 180 GYC*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269\|PubMed:10457020}.
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269\|PubMed:10457020}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012477546.1	1e-138	PREDICTED: putative axial regulator YABBY 2
Swissprot	Q9XFB0	1e-79	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A0D2PQJ9	1e-136	A0A0D2PQJ9_GOSRA; Uncharacterized protein
STRING	Gorai.001G127000.1	1e-137	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5581	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	5e-82	YABBY family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G127000.1
Entrez Gene	105793166

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]