PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G122100.3

Common Name

B456_001G122100, LOC105792684

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 342aa MW: 38314.8 Da PI: 9.205

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G122100.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.6	3.7e-10	37	78	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAA++sR+RKka++++Le +L++ ++L Gorai.001G122100.3 37 AKTLRRLAQNREAAKKSRLRKKAYVQQLESSRIKLTQLEQEL 78 6889*************************8766666655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-4	34	92	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.151	36	80	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-7	37	78	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.0E-6	38	81	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.2E-8	39	82	No hit	No description
PROSITE pattern	PS00036	0	41	56	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.1E-30	119	194	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MASDPSRTGT SLNQSAPIVK PLQEKKRAST SEKQLDAKTL RRLAQNREAA KKSRLRKKAY 60 VQQLESSRIK LTQLEQELQR ARSQGLLLGS SGGGVGNISS GAVICDMEYA RWLEDDERHM 120 SELRTGLHSN LSDTDLRLMV NTYLSHYDEI FRLKGMAAKF DVFHLLTGMW TSPAERCFLW 180 MGGFRPSELI KILISQLDPL TEQQLMGICS LQHSSQQAEE ALSQGLEQLQ QSLIDTVAGG 240 PAIDGMQQMA IALSKLANLE GFVRQADNLR QQTLHQLPRI LTVRQAARCF LVIGEYYGRL 300 RALSSLWASR PRGRLMSDEQ PCQTTTELQM VQPSQSHFAH F*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MASDPSRTGT SLNQSAPIVK PLQEKKRAST SEKQLDAKTL RRLAQNREAA KKSRLRKKAY  60
VQQLESSRIK LTQLEQELQR ARSQGLLLGS SGGGVGNISS GAVICDMEYA RWLEDDERHM  120
SELRTGLHSN LSDTDLRLMV NTYLSHYDEI FRLKGMAAKF DVFHLLTGMW TSPAERCFLW  180
MGGFRPSELI KILISQLDPL TEQQLMGICS LQHSSQQAEE ALSQGLEQLQ QSLIDTVAGG  240
PAIDGMQQMA IALSKLANLE GFVRQADNLR QQTLHQLPRI LTVRQAARCF LVIGEYYGRL  300
RALSSLWASR PRGRLMSDEQ PCQTTTELQM VQPSQSHFAH F*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269\|PubMed:20805327}.
Uniprot	TISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269\|PubMed:20805327}.

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012476845.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like isoform X2
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A0D2LXU0	0.0	A0A0D2LXU0_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2N8M6	0.0	A0A0D2N8M6_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2PXS3	0.0	A0A0D2PXS3_GOSRA; Uncharacterized protein
STRING	Gorai.001G122100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-165	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G122100.3
Entrez Gene	105792684

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]