PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G122100.2
Common NameB456_001G122100, LOC105792684
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 413aa    MW: 46238.3 Da    PI: 8.9195
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G122100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.24.7e-10108149445
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          k  rr+++NReAA++sR+RKka++++Le    +L++  ++L
  Gorai.001G122100.2 108 AKTLRRLAQNREAAKKSRLRKKAYVQQLESSRIKLTQLEQEL 149
                         6889*************************8766666655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.4E-4105163IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.151107151IPR004827Basic-leucine zipper domain
PfamPF001701.7E-7108149IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.31E-6109152No hitNo description
Gene3DG3DSA:1.20.5.1709.3E-8110153No hitNo description
PROSITE patternPS000360112127IPR004827Basic-leucine zipper domain
PfamPF141442.9E-30190265IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MFPSWPMRYR QTPGSSKSGG ESTDSGSALN TISSKTENQF EPDSPISKKA SSSYHQAFDQ  60
QNLQQQQQQQ EMASDPSRTG TSLNQSAPIV KPLQEKKRAS TSEKQLDAKT LRRLAQNREA  120
AKKSRLRKKA YVQQLESSRI KLTQLEQELQ RARSQGLLLG SSGGGVGNIS SGAVICDMEY  180
ARWLEDDERH MSELRTGLHS NLSDTDLRLM VNTYLSHYDE IFRLKGMAAK FDVFHLLTGM  240
WTSPAERCFL WMGGFRPSEL IKILISQLDP LTEQQLMGIC SLQHSSQQAE EALSQGLEQL  300
QQSLIDTVAG GPAIDGMQQM AIALSKLANL EGFVRQADNL RQQTLHQLPR ILTVRQAARC  360
FLVIGEYYGR LRALSSLWAS RPRGRLMSDE QPCQTTTELQ MVQPSQSHFA HF*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476845.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X2
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A0D2LXU00.0A0A0D2LXU0_GOSRA; Uncharacterized protein
TrEMBLA0A0D2N8M60.0A0A0D2N8M6_GOSRA; Uncharacterized protein
STRINGGorai.001G122100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-169bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  3. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]