PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G119200.1 | ||||||||
Common Name | B456_001G119200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 190aa MW: 22661.1 Da PI: 9.2963 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.8 | 1.4e-06 | 73 | 93 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + Cr + + tC++G+ C+F+H Gorai.001G119200.1 73 ATCRQYDE-NTCNRGGYCNFMH 93 57******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.469 | 69 | 96 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-4 | 73 | 94 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MAEHLASIFG TKKDRVNCPF YFKISTCRQS YYPPLQYELS KYVEIESLNL WDNLADYMRI 60 IVDFSPVTGF CEATCRQYDE NTCNRGGYCN FMHLYRISRS RRRRSHSRSK SRSSHRFRTS 120 CEEHSYGGHG HSKRYDDRDN YHEGRRKRNK EKRAKIEQSN WEREQQENAK IIDKDVANDN 180 NENRNNGYV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Necessary for the splicing of pre-mRNA. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016671977.1 | 1e-54 | PREDICTED: splicing factor U2af small subunit B-like | ||||
Refseq | XP_016671978.1 | 1e-54 | PREDICTED: splicing factor U2af small subunit B-like | ||||
Refseq | XP_016671980.1 | 1e-54 | PREDICTED: splicing factor U2af small subunit B-like | ||||
Refseq | XP_016671981.1 | 1e-54 | PREDICTED: splicing factor U2af small subunit B-like | ||||
Swissprot | Q9ZQW8 | 2e-33 | U2AFA_ORYSJ; Splicing factor U2af small subunit A | ||||
TrEMBL | A0A0D2PXP6 | 1e-139 | A0A0D2PXP6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G119200.1 | 1e-140 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44785.1 | 4e-12 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G119200.1 |
Publications ? help Back to Top | |||
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