PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G116400.1
Common NameB456_001G116400, LOC105791960
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 705aa    MW: 76282.3 Da    PI: 5.7734
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G116400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-06279299526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ G C+ Gd+C +aHg
  Gorai.001G116400.1 279 PCPEFRK-GSCRQGDNCEYAHG 299
                         8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.04E-1140150IPR020683Ankyrin repeat-containing domain
SMARTSM002480.03175105IPR002110Ankyrin repeat
PROSITE profilePS5029714.5375145IPR020683Ankyrin repeat-containing domain
PfamPF136375.3E-776128No hitNo description
Gene3DG3DSA:1.25.40.206.2E-1376150IPR020683Ankyrin repeat-containing domain
CDDcd002042.49E-977150No hitNo description
SMARTSM002480.13110142IPR002110Ankyrin repeat
PROSITE profilePS5008811.568110145IPR002110Ankyrin repeat
SMARTSM003565.0E-5274300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4278301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.094279301IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4279299IPR000571Zinc finger, CCCH-type
SMARTSM0035625309332IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.089309333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MCSGPKSKQA QTSFTMEGES HKEEGLPQKF SILLELSASN DLIGFRRAIE EEGYDIDESS  60
LWYGRRMGSK KLGFEERTPL LVASMFGSKD VINYIIKSGC VDVNRACGSD GATALHCAAA  120
GGSFESAEVV QILLGASADT TSVDANENRP GDLIAPAFNS AFSFKKKTLG SLLKGKESVG  180
QIEGLHAQVG NEMEGQEQQQ NSTAQALKEG AEKKEYPVDL TLPDIKNGIY GTDEFRMYTF  240
KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGSCRQ GDNCEYAHGI  300
FECWLHPAQY RTRLCKDETN CTRRVCFFAH KPDELRPLYA STGSAVPSPR SYSAKGSSLD  360
VGSMSPLALG SPSIMIPPTS TPPLTPTGAT SPMGGAMWPN QSNILPPTLQ LPGSRLKAAL  420
SARDMDLDME LFGLESHHLH QHKQLIDEIS GISSPTSWNN PLSTASAFSA SGDRNGELNR  480
FGGVKPTSLE DIFGSLDPIN LPQLQGNSLD AAAPQLQSPT GLRMRQNIDQ QLRASYPTNL  540
ASSPVRASPS FGIDPFGPTA ATLLSSRSAA FANRSQSFIE RTGVNCHSGI FSPASSANAV  600
PSNLSDWGSP DGRLDWGIQG EELNKMRKSA SFGFRSNFGN AVLSMPSSSD EPDVSRVQSL  660
AKDTPSGQLS LEDEQQQCHL SSGGAEMLPA WMEQLYAEQE QMVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475739.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0D2N8E30.0A0A0D2N8E3_GOSRA; Uncharacterized protein
STRINGGorai.001G116400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]