PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G115300.1
Common NameB456_001G115300, LOC105791854
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 470aa    MW: 52867.7 Da    PI: 8.198
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G115300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.4e-17154200148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT +Ed +l+++vkq+G + W+ Ia+ +  gR +kqc++rw+++l
  Gorai.001G115300.1 154 KGQWTDDEDRKLIRLVKQYGVRKWAQIAESLV-GRAGKQCRERWHNHL 200
                         799*****************************.*************97 PP
2Myb_DNA-binding54.62.5e-17206248145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++W++eE+ +l++a+++ G++ W+ Ia+ ++ gRt++ +k++w+
  Gorai.001G115300.1 206 KDSWSEEEERILIEAHAKVGNR-WAEIAKFIP-GRTENAIKNHWN 248
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.107149204IPR017930Myb domain
SuperFamilySSF466891.22E-30152247IPR009057Homeodomain-like
SMARTSM007172.0E-16153202IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-27155208IPR009057Homeodomain-like
PfamPF139211.3E-19157214No hitNo description
CDDcd001672.13E-15157200No hitNo description
SMARTSM007179.1E-18205253IPR001005SANT/Myb domain
PROSITE profilePS5129421.601205255IPR017930Myb domain
CDDcd001673.13E-14208251No hitNo description
Gene3DG3DSA:1.10.10.602.7E-21209253IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MKELRGRRVA FGYGNLPCNN NYKSSLCKSS PPLSAIDRFL WGQTQSLSPH SQAAHERPYS  60
IQNNVKINKG TVLGSTADAL LRGFSFPNDA IGGYLPTQTN PEESFLDGLF VDGEILALTD  120
DKNPNMEMKA SIKGDFPKGV VKRNKKVASA ALIKGQWTDD EDRKLIRLVK QYGVRKWAQI  180
AESLVGRAGK QCRERWHNHL RPDIKKDSWS EEEERILIEA HAKVGNRWAE IAKFIPGRTE  240
NAIKNHWNAT KRRQNSRKKN KQNDNQNGKP QSSILQDYIR SQNLNTPTNS STTSATPSSS  300
TFSENLSTQF KYFLPEPSES DDSHPLVAQT YDDELMFMQN FFANNNNTIH PSLDYSQTRN  360
PTEVFKSVHV VDHNLSKGSS TIDCTTFADT RFGFSSSIQE PNNEPRTTYL FSDLYLSRLL  420
NGATTSSFPN GDDYYNGDVN TNLLSEQASS DGRKEMDLIE MVSSCQFYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-471522542104C-Myb DNA-Binding Domain
1msf_C3e-471522542104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475576.10.0PREDICTED: transcription factor MYB44-like
TrEMBLA0A0D2N8B70.0A0A0D2N8B7_GOSRA; Uncharacterized protein
STRINGGorai.001G115300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.16e-66myb domain protein 119
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]