PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G112200.1 | ||||||||
Common Name | B456_001G112200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 337aa MW: 36298.1 Da PI: 5.7347 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.6 | 1.6e-29 | 165 | 218 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rl+Wtp+LH+rFv++v++L G++ A+Pkti++lm+v+gLt+e+v+SHLQkYRl Gorai.001G112200.1 165 RQRLVWTPQLHKRFVDVVAHL-GIKSAVPKTIMQLMNVEGLTRENVASHLQKYRL 218 58*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.484 | 162 | 221 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.69E-19 | 162 | 222 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.9E-30 | 164 | 223 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.1E-24 | 166 | 218 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.2E-8 | 168 | 217 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MGQEVKMRDF EANGGDDEEA TANAITTIVD DDDDDVEERV IEWEMGLPNC DDLTPLSQSL 60 IPPELASAFS ISPEPRRTTV DVNRASRNTL SSLRSTGAHS STTNNNNSNS NFRDTIVVEA 120 EGYGSGSGSG SDPKKMRKMD IAEEADSAVR TTENSDDPSG RTLKRQRLVW TPQLHKRFVD 180 VVAHLGIKSA VPKTIMQLMN VEGLTRENVA SHLQKYRLYL KRMQGLSNEG PSASDQLFAS 240 TPVPQSLHET GSGGGGGGGG SGGAGANGNG HLGMAIPMPY GAPMMPVPMP MCGHVGMHQG 300 LYHQQRQHHH QNGYEANSYG MMQQRDWSGG NRYGSQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-33 | 165 | 221 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 249 | 260 | TGSGGGGGGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:21236673, ECO:0000269|PubMed:21753751, ECO:0000269|PubMed:22311777}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:17132630, ECO:0000269|PubMed:21753751}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC471333 | 1e-113 | KC471333.1 Bombax ceiba clone 1 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012475018.1 | 0.0 | PREDICTED: transcription factor LUX-like | ||||
Refseq | XP_012475025.1 | 0.0 | PREDICTED: transcription factor LUX-like | ||||
Swissprot | Q9SNB4 | 1e-88 | PCL1_ARATH; Transcription factor LUX | ||||
TrEMBL | A0A0D2N871 | 0.0 | A0A0D2N871_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G112200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4055 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46640.2 | 5e-82 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G112200.1 |
Publications ? help Back to Top | |||
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