PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G111600.1

Common Name

B456_001G111600, LOC105791440

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 786aa MW: 88517.2 Da PI: 4.9054

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G111600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	371.1	1.4e-113	405	779	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL+ cA+avss+d++ a +lL++++e++sp gd +qRla+yf+++L+ar+ +s++ + + + ++++++ ++ l+++k f ++P+ Gorai.001G111600.1 405 LRTLLILCAQAVSSNDHRTAGELLKQIKENSSPLGDGTQRLAHYFANGLEARMDGSGTVMQNFYMSLASKKTTAADMLKSYKGFLSACPFK 495 5789*************************************************999888888888888888************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 k+ + aN++I+ +e+++++Hi+Df+i +G+QWp L+q L++Rp+gpp+lRiTg++ p+sg +e++e+tg+rLa+++++++vpfe+++ Gorai.001G111600.1 496 KLPIFFANKMIYYMTEKASALHIVDFGILYGFQWPVLIQHLSNRPGGPPKLRITGIELPQSGfrPTERIEATGRRLANYCKRFNVPFEYKA 586 *********************************************************9************************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 ++a+++e++++e+++++++E+laVn+ ++ ++llde+++++ +r++vLkl+++++P+++v++ + ++ns+ F++rf eal + s++fd++ Gorai.001G111600.1 587 IAAQNWENIRIEDIKINSNEVLAVNSLFRFENLLDETAEVDCPRNAVLKLIRRMNPDIFVHSIINGSYNSPFFVTRFREALFHLSSVFDMF 677 *************************************************************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 +++ pr++ r + E el g+e+vnvvaceg +r++r et+++W+ r+++aGFkp+pl+++ +++ ++ l+ + + + ++e++++l++gW Gorai.001G111600.1 678 DNTSPRDEPGRLMFESELYGQEAVNVVACEGPARVQRPETYKQWQIRMTRAGFKPLPLNQELMTKLRHKLKAWYHKDFVIDENNHWLLQGW 768 **********************************************************************888********** PP GRAS 363 kdrpLvsvSaW 373 k+r L++ S+W Gorai.001G111600.1 769 KGRILYASSCW 779 ********* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.613	379	760	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.0E-111	405	779	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence Send to blast
MEPKFTEFSD YINGFSVEDL DDTLRLNSVQ NSNGTIGFEF NDPSPDLNFL NMNAAVAPSE 60 PDPVTFVQPL TVSTDGSSIS TSSGWSPEGE SLSPSDDNDS TDPVLKYITQ MLMEENMEEP 120 HMFNNYLALK DTEKSLYEVL VEPYPQTSEP QPLLNQNMEA PESNLSGSTN GYWSASIGTN 180 YGTGNYNDHQ VVGEVWESPS SLSQPPLTGD YDFQPALQQP NSQVSVNSTN SLSNPGNRTM 240 ESSISELLAQ NIFNDKESVL QFQRGFEEAS KFLPSSNQLM IGLESNVFPT GQKGKVPNDV 300 VKVGEDEREK LHEGLRGRKN HGRDLEDLEE ERSNKQSATY TDESELSEMF DKVLLYPVGQ 360 FICCNDNESV QHTENKALRQ KEQSNGSGAG KPRSKKQGKK ETVDLRTLLI LCAQAVSSND 420 HRTAGELLKQ IKENSSPLGD GTQRLAHYFA NGLEARMDGS GTVMQNFYMS LASKKTTAAD 480 MLKSYKGFLS ACPFKKLPIF FANKMIYYMT EKASALHIVD FGILYGFQWP VLIQHLSNRP 540 GGPPKLRITG IELPQSGFRP TERIEATGRR LANYCKRFNV PFEYKAIAAQ NWENIRIEDI 600 KINSNEVLAV NSLFRFENLL DETAEVDCPR NAVLKLIRRM NPDIFVHSII NGSYNSPFFV 660 TRFREALFHL SSVFDMFDNT SPRDEPGRLM FESELYGQEA VNVVACEGPA RVQRPETYKQ 720 WQIRMTRAGF KPLPLNQELM TKLRHKLKAW YHKDFVIDEN NHWLLQGWKG RILYASSCWV 780 PAEES*

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence Send to blast

MEPKFTEFSD YINGFSVEDL DDTLRLNSVQ NSNGTIGFEF NDPSPDLNFL NMNAAVAPSE  60
PDPVTFVQPL TVSTDGSSIS TSSGWSPEGE SLSPSDDNDS TDPVLKYITQ MLMEENMEEP  120
HMFNNYLALK DTEKSLYEVL VEPYPQTSEP QPLLNQNMEA PESNLSGSTN GYWSASIGTN  180
YGTGNYNDHQ VVGEVWESPS SLSQPPLTGD YDFQPALQQP NSQVSVNSTN SLSNPGNRTM  240
ESSISELLAQ NIFNDKESVL QFQRGFEEAS KFLPSSNQLM IGLESNVFPT GQKGKVPNDV  300
VKVGEDEREK LHEGLRGRKN HGRDLEDLEE ERSNKQSATY TDESELSEMF DKVLLYPVGQ  360
FICCNDNESV QHTENKALRQ KEQSNGSGAG KPRSKKQGKK ETVDLRTLLI LCAQAVSSND  420
HRTAGELLKQ IKENSSPLGD GTQRLAHYFA NGLEARMDGS GTVMQNFYMS LASKKTTAAD  480
MLKSYKGFLS ACPFKKLPIF FANKMIYYMT EKASALHIVD FGILYGFQWP VLIQHLSNRP  540
GGPPKLRITG IELPQSGFRP TERIEATGRR LANYCKRFNV PFEYKAIAAQ NWENIRIEDI  600
KINSNEVLAV NSLFRFENLL DETAEVDCPR NAVLKLIRRM NPDIFVHSII NGSYNSPFFV  660
TRFREALFHL SSVFDMFDNT SPRDEPGRLM FESELYGQEA VNVVACEGPA RVQRPETYKQ  720
WQIRMTRAGF KPLPLNQELM TKLRHKLKAW YHKDFVIDEN NHWLLQGWKG RILYASSCWV  780
PAEES*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-46	412	781	25	379	Protein SCARECROW
5b3h_D	2e-46	412	781	25	379	Protein SCARECROW
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012474962.1	0.0	PREDICTED: scarecrow-like protein 34
Refseq	XP_012474968.1	0.0	PREDICTED: scarecrow-like protein 34
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A0D2PXB5	0.0	A0A0D2PXB5_GOSRA; Uncharacterized protein
STRING	Gorai.001G111600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Gorai.001G111600.1
Entrez Gene	105791440

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]