PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G109300.1 | ||||||||
Common Name | B456_001G109300, LOC105791205 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 318aa MW: 33776.4 Da PI: 9.2666 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.3 | 1.9e-39 | 66 | 126 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+s+ntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+rknkk++ Gorai.001G109300.1 66 PEAALKCPRCESSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRKNKKNK 126 67899*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-34 | 50 | 120 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.9E-33 | 69 | 124 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.506 | 70 | 124 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 72 | 108 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MVFSSHVPIY LDPPNLQQHQ QGNGSENPDQ FSPLPPPPPH VGAGGPASIR PSSMADRARL 60 AKIPQPEAAL KCPRCESSNT KFCYFNNYSL SQPRHFCKTC RRYWTRGGAL RNVPVGGGCR 120 KNKKNKSSSS EPPAEKQTGN SNSKNSVVIP TEITGHLPFM ASLQNFSQYG VGNIGLNFGG 180 IQGETSGASR QADMGFQIGT NSGMSSAGIL SSSSGGGGGT HQHQQFPFFD PSNGLYAFQS 240 EGMEGSSSMG GESQLLRSMS PCSRASHLAP VKMETNHQGL NLSRPQLGVS ENNQYWGGNS 300 WTNISGLNSS GSTNHLL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012474635.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 | ||||
TrEMBL | A0A0D2PIS0 | 0.0 | A0A0D2PIS0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G109300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1713 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28810.2 | 7e-50 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G109300.1 |
Entrez Gene | 105791205 |
Publications ? help Back to Top | |||
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