PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G100000.3
Common NameB456_001G100000, LOC105790315
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 458aa    MW: 51431.3 Da    PI: 5.6029
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G100000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.4e-08394448146
                         TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                         r+ WT+eE++ l+++v+++ +       W++I ++       +R + ++k++w +
  Gorai.001G100000.3 394 RLHWTAEEEDMLKELVHKFSSQvnkniPWRKILEHGRpvfhSTRIPVDLKDKWKN 448
                         789********************************99****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579038.64E-747103IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.1E-649101IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002491.4E-45197IPR001965Zinc finger, PHD-type
PROSITE patternPS0135905296IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5129410.706389454IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-10390457IPR009057Homeodomain-like
SuperFamilySSF466892.57E-8392451IPR009057Homeodomain-like
SMARTSM007171.6E-5393452IPR001005SANT/Myb domain
PfamPF002491.7E-6395449IPR001005SANT/Myb domain
CDDcd116606.77E-8397450No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MGNCNVNGDA LVNVDDKVND RDEEKGDDDV ARCVRGKHAD CIVVDWLNGE YCFECNSGSG  60
QVLVCSENGC PVALHEACMT WRPIFDDMGK FYCPYCLYKK EVARFKDLTT EAMLARKELS  120
NFICLRRDSR NKEREGETVS MKGASVSTMA REVGCGDCRN GLNDDGKETR HRSQDETRGV  180
DVIRKEQSNE QNISRAHGFE NVGNGEMMEE VEEDSSDSGG DDIGEGRQQK QPSSSSGVGT  240
VEETQGVDVI RKEQSNEQNI SRGHGFENVG NREMMEEDIE ISSDSGNAEI GDDRRELRPS  300
SSKVPVIESF EFVSRNLDAE TLVTHQKRDK QRANKAQPLK VVSPEKSSLQ PSTSAKNMNV  360
NQERKTVAVK ISEERAKSTK RSLLPVLGTE KRRRLHWTAE EEDMLKELVH KFSSQVNKNI  420
PWRKILEHGR PVFHSTRIPV DLKDKWKNIV AKEISKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1390394KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473343.10.0PREDICTED: uncharacterized protein LOC105790315 isoform X3
TrEMBLA0A0D2QN800.0A0A0D2QN80_GOSRA; Uncharacterized protein
STRINGGorai.001G100000.10.0(Gossypium raimondii)
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]