PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G099700.1
Common NameB456_001G099700, LOC105790308
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 400aa    MW: 43786.8 Da    PI: 5.1773
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G099700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.9e-06444539
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        +C+ +++++   +C+++  +lC +C  + H+       H++
  Gorai.001G099700.1  4 NCDFCGDQRPVVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                        6*****************************65677777765 PP
2zf-B_box20.97.4e-074688440
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40
                          C++++++++   C + ++ lC++C   +H g       H+++
  Gorai.001G099700.1 46 LLCERCNSQPAFVRCVEERVSLCQNCDWMGH-GtstsnsrHKRQ 88
                        57*****************************.547777788765 PP
3CCT63.37.6e-22342385144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R  a++RYkeK+ktR FeK++rY+sRKa+A+ R+RvKGrFvk+ 
  Gorai.001G099700.1 342 RTDAVMRYKEKKKTRMFEKRVRYASRKARADVRKRVKGRFVKAG 385
                         889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.2547IPR000315B-box-type zinc finger
CDDcd000212.09E-7547No hitNo description
SMARTSM003368.2E-9547IPR000315B-box-type zinc finger
PROSITE profilePS501198.9734390IPR000315B-box-type zinc finger
CDDcd000212.63E-54790No hitNo description
SMARTSM003360.74890IPR000315B-box-type zinc finger
PfamPF062034.1E-17342384IPR010402CCT domain
PROSITE profilePS5101715.239342384IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGYNCDFCGD QRPVVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC  60
VEERVSLCQN CDWMGHGTST SNSRHKRQAI NCYSGCPSSA ELSSIWPFFQ QPPSAGESSC  120
ERELGLMSIN ENIASTSWGP MENNISQDNT GIAITNDTCN SDKESSMGKS SARLLDQPSG  180
SKDTSLPKLC CPQTKYPGLS EDDLYDDFNM DEVDLNLEKY EELFGMTLNH SEELLENGGI  240
ASLFGTKDMP AADSDCQVAA AAEGSSVGLV NAIQPACSNA ASADSMMSNK TDSILYFTAR  300
QPHPGESSAG DYQDCGASSM LLMGEPPWCP PCTETSFTSA TRTDAVMRYK EKKKTRMFEK  360
RVRYASRKAR ADVRKRVKGR FVKAGDAYDY DPLSPTRSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473295.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-140COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0D2QN740.0A0A0D2QN74_GOSRA; Uncharacterized protein
STRINGGorai.001G099700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-122CONSTANS-like 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]