PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G096900.4
Common NameB456_001G096900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 437aa    MW: 47560.1 Da    PI: 8.1523
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G096900.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.3e-124772126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ++++ C++++rtG C yG++C+F+H+
  Gorai.001G096900.4 47 PGEPDCSYYLRTGSCGYGSNCRFNHP 72
                        5789*********************8 PP
2zf-CCCH36.86.5e-1291115327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C +f++tGtCkyG++Ck++H++
  Gorai.001G096900.4  91 QPDCGYFLKTGTCKYGSTCKYHHPK 115
                         789********************96 PP
3zf-CCCH38.32.2e-12137160427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         + C++f+rtG Ck+G  CkF+H++
  Gorai.001G096900.4 137 KSCPYFMRTGSCKFGVACKFHHPQ 160
                         66********************97 PP
4zf-CCCH39.69e-13279304227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++Cr+++ tGtCkyG+ Ck++H++
  Gorai.001G096900.4 279 DQPECRYYMNTGTCKYGSDCKYHHPK 304
                         689*********************96 PP
5zf-CCCH29.21.5e-09324349126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ++++ C+ +  +G CkyG++C+F H+
  Gorai.001G096900.4 324 PGQPVCSSYTMYGLCKYGPTCRFDHP 349
                         5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.2E-64673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9484674IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-94872IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-65175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-55272IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-688115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.71888116IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-991115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-692116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-494114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6132161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446133161IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5135160IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-10136160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5138159IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-6277304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549277305IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-10279304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-7280305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-6283304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892323351IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5323350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5323349IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-6325349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4328348IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MPDNRQVQNN VVSNQSADNI EAILRLKIND NNQEVGVSKS VSYPDRPGEP DCSYYLRTGS  60
CGYGSNCRFN HPAYDAQGGQ YREELPERVG QPDCGYFLKT GTCKYGSTCK YHHPKDRNGA  120
GPVTFNILGL PMRQDEKSCP YFMRTGSCKF GVACKFHHPQ PASAGTGLPV NGPVGSSVLP  180
PTGVPYAGGL STWSLPRAPF VSGPHLQTQS YMPVVVSPSQ NIIPANGWST YMGNMSPASS  240
AGILGSNYTY NSMNPAELGS SGQMLLSSAP ASNFPERPDQ PECRYYMNTG TCKYGSDCKY  300
HHPKERIANS AMSSVGPLGL PSRPGQPVCS SYTMYGLCKY GPTCRFDHPY TGYPYNYALS  360
FPLSMFDTSL LTYQRMTPPP NLYEAPLPSR VPDWARNTDP PSKKHQNLVT KNSDDSSEQV  420
ASPPHSLQSS SKTSHD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5805624e-40JX580562.1 Gossypium hirsutum clone NBRI_GE13012 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472841.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1
TrEMBLA0A0D2PWW50.0A0A0D2PWW5_GOSRA; Uncharacterized protein
STRINGGorai.001G096900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-125C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]