PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G096900.1 | ||||||||
Common Name | B456_001G096900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 474aa MW: 51928.3 Da PI: 8.5709 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37 | 5.8e-12 | 48 | 73 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++rtG C yG++C+F+H+ Gorai.001G096900.1 48 PGEPDCSYYLRTGSCGYGSNCRFNHP 73 5789*********************8 PP | |||||||
2 | zf-CCCH | 36.7 | 7.1e-12 | 92 | 116 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ Gorai.001G096900.1 92 QPDCGYFLKTGTCKYGSTCKYHHPK 116 789********************96 PP | |||||||
3 | zf-CCCH | 38.2 | 2.4e-12 | 138 | 161 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++f+rtG Ck+G CkF+H++ Gorai.001G096900.1 138 KSCPYFMRTGSCKFGVACKFHHPQ 161 56********************97 PP | |||||||
4 | zf-CCCH | 39.4 | 9.9e-13 | 280 | 305 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+++ tGtCkyG+ Ck++H++ Gorai.001G096900.1 280 DQPECRYYMNTGTCKYGSDCKYHHPK 305 689*********************96 PP | |||||||
5 | zf-CCCH | 29.1 | 1.7e-09 | 325 | 350 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ + +G CkyG++C+F H+ Gorai.001G096900.1 325 PGQPVCSSYTMYGLCKYGPTCRFDHP 350 5789*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.948 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-6 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-9 | 49 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.98E-6 | 52 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-5 | 53 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.718 | 89 | 117 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.7E-6 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-9 | 92 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 93 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-4 | 95 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 133 | 162 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.446 | 134 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-5 | 136 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-10 | 137 | 161 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-5 | 139 | 160 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.549 | 278 | 306 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.1E-6 | 278 | 305 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-10 | 280 | 305 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-6 | 281 | 306 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.0E-6 | 284 | 305 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.892 | 324 | 352 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.11E-5 | 324 | 350 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 324 | 351 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-6 | 326 | 350 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.6E-4 | 329 | 349 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MPDNRQVQNN VVSNQSADNI EEAILRLKIN DNNQEVGVSK SVSYPDRPGE PDCSYYLRTG 60 SCGYGSNCRF NHPAYDAQGG QYREELPERV GQPDCGYFLK TGTCKYGSTC KYHHPKDRNG 120 AGPVTFNILG LPMRQDEKSC PYFMRTGSCK FGVACKFHHP QPASAGTGLP VNGPVGSSVL 180 PPTGVPYAGG LSTWSLPRAP FVSGPHLQTQ SYMPVVVSPS QNIIPANGWS TYMGNMSPAS 240 SAGILGSNYT YNSMNPAELG SSGQMLLSSA PASNFPERPD QPECRYYMNT GTCKYGSDCK 300 YHHPKERIAN SAMSSVGPLG LPSRPGQPVC SSYTMYGLCK YGPTCRFDHP YTGYPYNYAL 360 SFPLSMFDTS LLTYQRMTPP PNLYEAPLPS RVPDWARNTD PPSKKHQNLV TKNSDDSSEQ 420 KKKLSAVFGH ASLGSTATER ETVRRNFERR WTGKNGNMTE VVIFTVAKTI ICY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX580562 | 4e-40 | JX580562.1 Gossypium hirsutum clone NBRI_GE13012 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016744990.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1 | ||||
Refseq | XP_016744999.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1 | ||||
Swissprot | Q94AD9 | 1e-129 | C3H3_ARATH; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A0D2N7M7 | 0.0 | A0A0D2N7M7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G096900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2380 | 26 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-127 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G096900.1 |
Publications ? help Back to Top | |||
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