PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G096900.1
Common NameB456_001G096900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 474aa    MW: 51928.3 Da    PI: 8.5709
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G096900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.8e-124873126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ++++ C++++rtG C yG++C+F+H+
  Gorai.001G096900.1 48 PGEPDCSYYLRTGSCGYGSNCRFNHP 73
                        5789*********************8 PP

2zf-CCCH36.77.1e-1292116327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C +f++tGtCkyG++Ck++H++
  Gorai.001G096900.1  92 QPDCGYFLKTGTCKYGSTCKYHHPK 116
                         789********************96 PP

3zf-CCCH38.22.4e-12138161427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         + C++f+rtG Ck+G  CkF+H++
  Gorai.001G096900.1 138 KSCPYFMRTGSCKFGVACKFHHPQ 161
                         56********************97 PP

4zf-CCCH39.49.9e-13280305227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++Cr+++ tGtCkyG+ Ck++H++
  Gorai.001G096900.1 280 DQPECRYYMNTGTCKYGSDCKYHHPK 305
                         689*********************96 PP

5zf-CCCH29.11.7e-09325350126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ++++ C+ +  +G CkyG++C+F H+
  Gorai.001G096900.1 325 PGQPVCSSYTMYGLCKYGPTCRFDHP 350
                         5789*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9484775IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-64774IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-94973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-55373IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.71889117IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-689116IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-992116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-693117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-495115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446134162IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5136161IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-10137161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-5139160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549278306IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-6278305IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-10280305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-6281306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-6284305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892324352IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5324350IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5324351IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-6326350IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-4329349IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MPDNRQVQNN VVSNQSADNI EEAILRLKIN DNNQEVGVSK SVSYPDRPGE PDCSYYLRTG  60
SCGYGSNCRF NHPAYDAQGG QYREELPERV GQPDCGYFLK TGTCKYGSTC KYHHPKDRNG  120
AGPVTFNILG LPMRQDEKSC PYFMRTGSCK FGVACKFHHP QPASAGTGLP VNGPVGSSVL  180
PPTGVPYAGG LSTWSLPRAP FVSGPHLQTQ SYMPVVVSPS QNIIPANGWS TYMGNMSPAS  240
SAGILGSNYT YNSMNPAELG SSGQMLLSSA PASNFPERPD QPECRYYMNT GTCKYGSDCK  300
YHHPKERIAN SAMSSVGPLG LPSRPGQPVC SSYTMYGLCK YGPTCRFDHP YTGYPYNYAL  360
SFPLSMFDTS LLTYQRMTPP PNLYEAPLPS RVPDWARNTD PPSKKHQNLV TKNSDDSSEQ  420
KKKLSAVFGH ASLGSTATER ETVRRNFERR WTGKNGNMTE VVIFTVAKTI ICY*
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5805624e-40JX580562.1 Gossypium hirsutum clone NBRI_GE13012 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744990.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1
RefseqXP_016744999.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1
SwissprotQ94AD91e-129C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0D2N7M70.0A0A0D2N7M7_GOSRA; Uncharacterized protein
STRINGGorai.001G096900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-127C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]