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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gorai.001G096700.1 | ||||||||
| Common Name | B456_001G096700, LOC105789991 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 567aa MW: 62247.6 Da PI: 6.0692 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 84.9 | 8e-27 | 194 | 247 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G ++AtPk+ilelm+v+ Lt ++v SHLQk+Rl
Gorai.001G096700.1 194 KPRIVWSAELHSKFVAAVNQL-GMKNATPKKILELMNVEKLTTQNVGSHLQKFRL 247
79*******************.9*******************************8 PP
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| 2 | Response_reg | 81.5 | 2.7e-27 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91
vl vdD+p+ + ll+++l++ +y +v+++ ++ al+ll+++++Dl+++D+ mp+mdG++ll+ e++lp+i+++a+g+ + + + +
Gorai.001G096700.1 20 VLAVDDDPTCLLLLETLLRRCKY-NVTTTNQAITALKLLRQNKFDLVICDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDTNVVMKGIT 108
799********************.**************************************87754.558******************** PP
TTESEEEESS--HHHHHH CS
Response_reg 92 aGakdflsKpfdpeelvk 109
Ga d+l Kp+ +eel +
Gorai.001G096700.1 109 HGACDYLLKPVRIEELNN 126
**************9965 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:3.40.50.2300 | 1.2E-42 | 17 | 158 | No hit | No description |
| SuperFamily | SSF52172 | 1.71E-37 | 18 | 144 | IPR011006 | CheY-like superfamily |
| SMART | SM00448 | 4.3E-31 | 18 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.541 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 5.3E-25 | 20 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 4.65E-25 | 21 | 124 | No hit | No description |
| PROSITE profile | PS51294 | 10.587 | 188 | 250 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 4.3E-18 | 192 | 251 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 193 | 252 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 2.4E-22 | 194 | 247 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 3.1E-6 | 198 | 245 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 567 aa Download sequence Send to blast |
MRVERIINET NDEFPIGIRV LAVDDDPTCL LLLETLLRRC KYNVTTTNQA ITALKLLRQN 60 KFDLVICDVH MPDMDGFKLL ELVGLEMDLP VIMLSANGDT NVVMKGITHG ACDYLLKPVR 120 IEELNNIWQH VVRRKRFERK DRYNSDSQDK LRADSGEAVG MGSIGNNGKL KKKRKDQDED 180 EERDENEDPS IRKKPRIVWS AELHSKFVAA VNQLGMKNAT PKKILELMNV EKLTTQNVGS 240 HLQKFRLYLK RISCAANQQV NIAAAVRMRS PNGLGNFHTL AGSNQLHNAA FRSFPPRGVL 300 GRLNTHAGLL IRSLPSPGTI RSGHGQSAVN SGNDQSKLQS FVSGIHNANI LQGLPMSLEL 360 DQVQTNNGVS HIGELPIADS TTVFPVSSSL IDATITGFSG NPLLGVTSHS LMLEASSQQA 420 GNSRDIVPAI GFRNGNTLSD FAPLAPASNR ESNADLQCEP IPINCNAGEL ITSAPQEWNS 480 PYQSNVTPCS MNSSIPVSGT MVQFGLCLDQ NNSMDSDSIG PSSFIDNSAM EQSIIDKEGY 540 LMLEPWEQGS HIPYNIGLLE DLWELQ* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 2e-22 | 190 | 253 | 1 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | DEVELOPMENTAL STAGE: Detected immediately after seed germination. {ECO:0000269|PubMed:17363254}. | |||||
| Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in leaves. Expressed at the root transition zone (PubMed:17363254). {ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:17363254}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012472811.1 | 0.0 | PREDICTED: two-component response regulator ARR12-like isoform X1 | ||||
| Swissprot | P62598 | 1e-130 | ARR12_ARATH; Two-component response regulator ARR12 | ||||
| TrEMBL | A0A0D2LWT8 | 0.0 | A0A0D2LWT8_GOSRA; Uncharacterized protein | ||||
| STRING | Gorai.001G096700.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM25055 | 3 | 4 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G25180.1 | 1e-111 | response regulator 12 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Gorai.001G096700.1 |
| Entrez Gene | 105789991 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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