PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G091900.1

Common Name

B456_001G091900, LOC105789451

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 335aa MW: 38433.1 Da PI: 8.5321

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G091900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	150.6	7.6e-47	19	167	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrFhPtdeelv +yL++kve+k++++ e ik++diy+++PwdLpk + +eke yf++kr +ky+++ r+nr+t sg+Wkatg dk++ Gorai.001G091900.1 19 LPGFRFHPTDEELVGFYLRRKVEKKPISI-ELIKQIDIYQYDPWDLPKVSNVGEKERYFYCKRGRKYRNSIRPNRVTGSGFWKATGIDKPI 108 59*************************.89***********88888999******************************** PP NAM 93 lskkgel.......................vglkktLvfykgrapkgektdWvmheyrl 128 +s+++++ +glkk+Lv+y+g a kg+ktdW+mhe+rl Gorai.001G091900.1 109 YSSSTKEphhhhhhhhhqhdrhqhqhlctcIGLKKSLVYYRGCAGKGTKTDWMMHEFRL 167 83333555666777788899999********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	47.107	18	191	IPR003441	NAC domain
SuperFamily	SSF101941	2.35E-49	19	190	IPR003441	NAC domain
Pfam	PF02365	2.0E-23	20	167	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005992	Biological Process	trehalose biosynthetic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006561	Biological Process	proline biosynthetic process
GO:0009718	Biological Process	anthocyanin-containing compound biosynthetic process
GO:0010120	Biological Process	camalexin biosynthetic process
GO:0042538	Biological Process	hyperosmotic salinity response
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MEDSIDDNKK KRDGEEIKLP GFRFHPTDEE LVGFYLRRKV EKKPISIELI KQIDIYQYDP 60 WDLPKVSNVG EKERYFYCKR GRKYRNSIRP NRVTGSGFWK ATGIDKPIYS SSTKEPHHHH 120 HHHHHQHDRH QHQHLCTCIG LKKSLVYYRG CAGKGTKTDW MMHEFRLPPN GNHTTKAQEA 180 EVWTLCRIFK RTPPNNKYPP TTVASTAAWK FSATTTIKQS GTDSPTTCCS SLEDVSQSQN 240 SYDKCKSLCD TIIQQKGNKP DMSMDQVDAR NYFLYGGTLP LSTQQAPFTA TNFPTFCNHP 300 SGDVDVFSNG NWDELRPVVE VALEPYTSHA FDFT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-45	20	191	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-45	20	191	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-45	20	191	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-45	20	191	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	9e-45	20	191	22	168	NAC domain-containing protein 19
3swm_B	9e-45	20	191	22	168	NAC domain-containing protein 19
3swm_C	9e-45	20	191	22	168	NAC domain-containing protein 19
3swm_D	9e-45	20	191	22	168	NAC domain-containing protein 19
3swp_A	9e-45	20	191	22	168	NAC domain-containing protein 19
3swp_B	9e-45	20	191	22	168	NAC domain-containing protein 19
3swp_C	9e-45	20	191	22	168	NAC domain-containing protein 19
3swp_D	9e-45	20	191	22	168	NAC domain-containing protein 19
4dul_A	8e-45	20	191	19	165	NAC domain-containing protein 19
4dul_B	8e-45	20	191	19	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00310	DAP	Transfer from AT2G43000	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012472284.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1 isoform X1
TrEMBL	A0A0D2QMS2	0.0	A0A0D2QMS2_GOSRA; Uncharacterized protein
STRING	Gorai.001G091900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-86	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Gorai.001G091900.1
Entrez Gene	105789451

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]