PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.001G090100.1 | ||||||||
Common Name | B456_001G090100, LOC105770595 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 210aa MW: 23860.1 Da PI: 9.7855 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.4 | 1.8e-19 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ll+++v+ +G g+W+++ar g++R++k+c++rw +yl Gorai.001G090100.1 13 KGPWTHEEDKLLAEYVTFHGEGRWSSVARSTGLNRSGKSCRLRWVNYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.7 | 8.3e-16 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ + v++++++G++ W+tIa++++ gRt++++k++w+++ Gorai.001G090100.1 66 RGHITPQEEGIMVELHALWGNK-WSTIAKYLP-GRTDNEIKNYWRTH 110 6778******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.261 | 8 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.44E-30 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-15 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-17 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-23 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.31E-11 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 18.185 | 65 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-12 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 66 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-23 | 68 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.35E-9 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MMVRGAPKQA WRKGPWTHEE DKLLAEYVTF HGEGRWSSVA RSTGLNRSGK SCRLRWVNYL 60 RPGLKRGHIT PQEEGIMVEL HALWGNKWST IAKYLPGRTD NEIKNYWRTH FMKKERSAQR 120 QQKRKALKLK QQPPQPNKEE TAAVGDGGGA TDHEGRMCEE AATLLDEYLM NEGLWWNQQQ 180 QANNIAMQMQ QVACNCYGGG VISNGGCIF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-25 | 13 | 114 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB59-1 and isoform MYB59-2 are present in roots, leaves, and seedlings, while the expression of isoform MYB59-3 and isoform MYB59-4 is confined to seedlings. {ECO:0000269|PubMed:16531467}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX590828 | 3e-67 | JX590828.1 Gossypium hirsutum clone NBRI_GE25823 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012447326.1 | 1e-156 | PREDICTED: transcription factor MYB59-like | ||||
Swissprot | Q4JL84 | 2e-49 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | A0A0D2PRK3 | 1e-155 | A0A0D2PRK3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G090100.1 | 1e-156 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G30210.1 | 2e-62 | myb domain protein 121 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.001G090100.1 |
Entrez Gene | 105770595 |
Publications ? help Back to Top | |||
---|---|---|---|
|