PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G089800.1

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 270aa MW: 30956.4 Da PI: 7.5925

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G089800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	85.9	4e-27	192	241	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 +r++W++eLH+rFvea++ LGG+e+AtPk+i++lm+v+gLt+++vkSHLQ Gorai.001G089800.1 192 NRRCWSSELHSRFVEALNMLGGNEVATPKQIRDLMQVEGLTIDQVKSHLQ 241 79************************************************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.639	188	248	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-14	189	244	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-22	190	241	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.0E-23	191	245	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-6	193	241	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MNPNSVELSL SLKPLYVPKS LSSLFLDLSK IDSQYYKLSV LSDYIGKLEE ELARVQPLKH 60 LLPQCTLLLM EAIETLKVEF TNIKNNLKNN EKEGERETQK IISTCSATEE HYGNSQPCNE 120 KGNNMEGLMM AYKENSTWNC VGASSSSGKE KEVAAIDEYS WRNDETFYCN YDHHHHHHHH 180 LKPLTQPIWK NNRRCWSSEL HSRFVEALNM LGGNEVATPK QIRDLMQVEG LTIDQVKSHL 240 QVKFNLLSLI NNNACIILYI VPKKIRNKK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN663885	1e-114	JN663885.1 Gossypium hirsutum microsatellite DPL511 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012434799.1	0.0	PREDICTED: uncharacterized protein LOC105761504, partial
TrEMBL	A0A0D2PWP8	1e-158	A0A0D2PWP8_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.001G089800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15410	7	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-20	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G089800.1