PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G089700.1

Common Name

B456_001G089700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 254aa MW: 29357.8 Da PI: 8.0652

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G089700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.6	9.2e-31	192	246	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +r++W++eLH+rFvea++ LGG+e+AtPk+i++lm+v+gLt+e+vkSHLQkYRl+ Gorai.001G089700.1 192 NRRCWSSELHSRFVEALNMLGGIEVATPKQIKNLMQVEGLTIEQVKSHLQKYRLH 246 79***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.15E-17	189	249	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-26	190	248	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-25	191	247	IPR006447	Myb domain, plants
Pfam	PF00249	3.9E-8	193	244	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MIFLIPFSGK KARCKTMNPS SIELSLSLKP SYVPKSISSL LLDLSKIDNQ YYKLSVLNDY 60 ICKLEEELAR VQPLKHLLPL CTLLLMEETE TLKHELLNIN NEKEQREIQE ECYANFQSCK 120 EKGNNMERLM LGCKENSTWN SVGESSSDGK GKEVAAIDEY SWRNDNQGFM YLNNYDHHHH 180 PKPLTQPIWK NNRRCWSSEL HSRFVEALNM LGGIEVATPK QIKNLMQVEG LTIEQVKSHL 240 QKYRLHYGKV RLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-15	193	244	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-15	193	244	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-15	193	244	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-15	193	244	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-15	193	244	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-15	193	244	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-15	193	244	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-15	193	244	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582232	6e-84	JX582232.1 Gossypium hirsutum clone NBRI_GE15026 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447289.1	1e-175	PREDICTED: uncharacterized protein LOC105770575 isoform X1
TrEMBL	A0A0D2PP38	0.0	A0A0D2PP38_GOSRA; Uncharacterized protein
STRING	Gorai.001G089700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15410	7	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	8e-23	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G089700.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]