PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G087200.1 | ||||||||
Common Name | B456_001G087200, LOC105770544 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 248aa MW: 28678.2 Da PI: 6.5103 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.9 | 4.7e-18 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll+++++++G g W+ ++++ g++R++k+c++rw++yl Gorai.001G087200.1 10 KGAWTEEEDLLLKKCIEKYGEGKWHQVPARAGLNRCRKSCRLRWLNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.6 | 1.7e-14 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg + ++E +l+++++++lG++ W++Ia +++ gRt++++k++w+++l Gorai.001G087200.1 63 RGHFAADEVDLIIRLHNLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 108 6778899***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.367 | 5 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.5E-29 | 7 | 104 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.4E-23 | 7 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-16 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-17 | 10 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.47E-12 | 12 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 60 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.154 | 62 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-13 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-13 | 63 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.38E-9 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEGSSLRVRK GAWTEEEDLL LKKCIEKYGE GKWHQVPARA GLNRCRKSCR LRWLNYLKPN 60 IKRGHFAADE VDLIIRLHNL LGNRWSLIAG RLPGRTANDV KNYWNTHLLK KIIDTSGKNS 120 KPKSYQPNPN TKIIKPRPHI LSKHSFLISL DEYNNNNNNN HAEASNNVAL ANDGNDDYGY 180 CFPNDHDEMM WWENMMINEK DVDGYQLQCS ANDFDQSVLD QPMNEDNYGS IIDEVFLDEE 240 LWNVFNP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-22 | 10 | 112 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 6e-22 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 6e-22 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC491877 | 0.0 | KC491877.1 Gossypium arboreum transcription factor AN2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012447247.1 | 0.0 | PREDICTED: transcription factor MYB75-like | ||||
Swissprot | Q9FNV9 | 3e-61 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A0D2PP18 | 0.0 | A0A0D2PP18_GOSRA; PAP1D | ||||
STRING | Gorai.001G087200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-62 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G087200.1 |
Entrez Gene | 105770544 |
Publications ? help Back to Top | |||
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