PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G084100.1
Common NameB456_001G084100, LOC105788857
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 286aa    MW: 32304.7 Da    PI: 7.1866
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G084100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH413.1e-13212236226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ktelC+ +++tGtC+y d C+FaHg
  Gorai.001G084100.1 212 KTELCNKWQQTGTCPYADHCQFAHG 236
                         8***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-17205243IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-10207242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.831210238IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-7210237IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9212236IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-12244277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-8244279IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5248275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.366248276IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEKPTSPSSN KPTTTTIANY VSPPLSPPLE DLTTDFSTMY DFIFSSTLPE SLSITPSTCS  60
SSSDDLKQIV PGDVSTEDRL NQARLILEYQ QLCDHFDLCV SRLQAIKGEV EKLRRENNDL  120
RVANIELIKL LSQSSQAAMI NRNLHCEKVA DLNEKRWETG LKKSLPKSLS FNSCNYVQRV  180
VNPPPPRVHV APGTRREEKG IEMEVYNQGM VKTELCNKWQ QTGTCPYADH CQFAHGITEL  240
RPVTRHPRYK TQVCRMILAG EACPYGHRCH FRHSLTEQEE LLISP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-20211277470Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6157471e-113JX615747.1 Gossypium hirsutum clone NBRI_GE59912 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471381.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A0D2QMI60.0A0A0D2QMI6_GOSRA; Uncharacterized protein
STRINGGorai.001G084100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.16e-66C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]