PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G076700.3

Common Name

B456_001G076700, LOC105788111

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 267aa MW: 30361.1 Da PI: 8.054

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G076700.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	91.7	1.6e-28	44	117	3	73
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec 73 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ k +++l+ +++ ++ + c Gorai.001G076700.3 44 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLNQPSKVIDWLLEATKDDVDKLPPLEFHHSlmpNPC 117 79************************************************************966666443333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-26	45	111	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.565	45	103	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MISSSREKSC FEAKQEGDGG KVSSSRQWQG FRNPRIVRVS RSFGGKDRHS KVCTIRGLRD 60 RRIRLSVPTA IQLYDLQDRL GLNQPSKVID WLLEATKDDV DKLPPLEFHH SLMPNPCQSS 120 PFTPLMDPNL MFMKDYEGET SMQVEREITD MKGKWIKEQE KLIFPVTNHG SSLPGGFMFN 180 TGTNSMPLNT YNHHWNPSQF TNHGFHHHHQ PENYFHGAIA NTYPPLPSCP PPSTTPSHFP 240 TFPWYGTNTN QDAAGDQDNS KLQFFT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	7e-20	50	104	1	55	Putative transcription factor PCF6
5zkt_B	7e-20	50	104	1	55	Putative transcription factor PCF6
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00065	PBM	Transfer from AT5G60970	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX620897	2e-65	JX620897.1 Gossypium hirsutum clone NBRI_GE67264 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012470301.1	0.0	PREDICTED: transcription factor TCP5-like
Refseq	XP_012470307.1	0.0	PREDICTED: transcription factor TCP5-like
TrEMBL	A0A0D2PN31	0.0	A0A0D2PN31_GOSRA; Uncharacterized protein
STRING	Gorai.001G076700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	3e-50	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Link Out ? help Back to Top
Phytozome	Gorai.001G076700.3
Entrez Gene	105788111

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]