PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G076700.2 | ||||||||
Common Name | B456_001G076700, LOC105788111 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 267aa MW: 30361.1 Da PI: 8.054 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 91.7 | 1.6e-28 | 44 | 117 | 3 | 73 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec 73 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ k +++l+ +++ ++ + c Gorai.001G076700.2 44 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLNQPSKVIDWLLEATKDDVDKLPPLEFHHSlmpNPC 117 79************************************************************966666443333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-26 | 45 | 111 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.565 | 45 | 103 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MISSSREKSC FEAKQEGDGG KVSSSRQWQG FRNPRIVRVS RSFGGKDRHS KVCTIRGLRD 60 RRIRLSVPTA IQLYDLQDRL GLNQPSKVID WLLEATKDDV DKLPPLEFHH SLMPNPCQSS 120 PFTPLMDPNL MFMKDYEGET SMQVEREITD MKGKWIKEQE KLIFPVTNHG SSLPGGFMFN 180 TGTNSMPLNT YNHHWNPSQF TNHGFHHHHQ PENYFHGAIA NTYPPLPSCP PPSTTPSHFP 240 TFPWYGTNTN QDAAGDQDNS KLQFFT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-20 | 50 | 104 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 7e-20 | 50 | 104 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX620897 | 2e-65 | JX620897.1 Gossypium hirsutum clone NBRI_GE67264 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012470301.1 | 0.0 | PREDICTED: transcription factor TCP5-like | ||||
Refseq | XP_012470307.1 | 0.0 | PREDICTED: transcription factor TCP5-like | ||||
TrEMBL | A0A0D2PN31 | 0.0 | A0A0D2PN31_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G076700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 3e-50 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G076700.2 |
Entrez Gene | 105788111 |
Publications ? help Back to Top | |||
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