PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G072800.2
Common NameB456_001G072800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 226aa    MW: 23306.5 Da    PI: 8.929
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G072800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-083055227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        kt+lC+ f+    Ck+Gd+C+FaHg+
  Gorai.001G072800.2 30 KTRLCNKFSSPEGCKFGDKCHFAHGE 55
                        8***********************96 PP
2zf-CCCH38.71.7e-12192216126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt+lC++fa+ G C +G+rC+FaHg
  Gorai.001G072800.2 192 YKTKLCDNFAK-GSCTFGERCHFAHG 216
                         9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.2E-142759IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5822856IPR000571Zinc finger, CCCH-type
SMARTSM003560.00532855IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-82859IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-63055IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.09E-1592168IPR004088K Homology domain, type 1
SMARTSM003221.1E-1297167IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.107.8E-1798167IPR004088K Homology domain, type 1
PROSITE profilePS5008414.65598162IPR004088K Homology domain, type 1
CDDcd001053.33E-15100162No hitNo description
PfamPF000134.1E-12100164IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.5E-16187222IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-9190221IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-8191217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.558191218IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-10192216IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MMNLAPAVQP ASRNVAATAA IPHGSASAVK TRLCNKFSSP EGCKFGDKCH FAHGEWELGT  60
PIAPSLDDPR SMAPLPGRMG SRMEPPPPSG PAATFGASAT AKISVDASLA GAIIGKGGVH  120
SKQICRQTGA KLSIREHESD PSLRNIELEG SFEQIKEASA MVRELISSLG PVPGPAKTAG  180
AHGGQGHPGS NYKTKLCDNF AKGSCTFGER CHFAHGAAEL RKSVV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469689.11e-163PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_016744340.11e-162PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ69XQ31e-76C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A0D2PJJ21e-163A0A0D2PJJ2_GOSRA; Uncharacterized protein
TrEMBLA0A0D2QIF21e-162A0A0D2QIF2_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NZN81e-161A0A1U8NZN8_GOSHI; zinc finger CCCH domain-containing protein 14-like
STRINGGorai.001G072800.11e-162(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-71C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]