PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G072800.1
Common NameB456_001G072800, LOC105787709
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 296aa    MW: 30833 Da    PI: 9.5737
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G072800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.86e-063659225
                        -S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                        k ++C  f+ t  C++G++C+F H
  Gorai.001G072800.1 36 KSKPCTKFFSTAGCQFGESCHFLH 59
                        7789******************** PP
2zf-CCCH25.62.2e-08100125227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+lC+ f+    Ck+Gd+C+FaHg+
  Gorai.001G072800.1 100 KTRLCNKFSSPEGCKFGDKCHFAHGE 125
                         8***********************96 PP
3zf-CCCH38.22.4e-12262286126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt+lC++fa+ G C +G+rC+FaHg
  Gorai.001G072800.1 262 YKTKLCDNFAK-GSCTFGERCHFAHG 286
                         9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.83461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.1083462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-53561IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-73659IPR000571Zinc finger, CCCH-type
PfamPF146080.434259No hitNo description
Gene3DG3DSA:4.10.1000.101.3E-1397129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.58298126IPR000571Zinc finger, CCCH-type
SMARTSM003560.005398125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-898129IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-6100125IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.31E-15162238IPR004088K Homology domain, type 1
SMARTSM003221.1E-12167237IPR004087K Homology domain
PROSITE profilePS5008414.655168232IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.3E-16168237IPR004088K Homology domain, type 1
CDDcd001058.42E-15170232No hitNo description
PfamPF000136.8E-12170234IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.3E-16257292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-9260291IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-8261287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.558261288IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9262286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDTRKRGRRE AGFNANGGIK KSKPELESLS TGVGSKSKPC TKFFSTAGCQ FGESCHFLHY  60
VPGGYNAVSQ MMNLAPAVQP ASRNVAATAA IPHGSASAVK TRLCNKFSSP EGCKFGDKCH  120
FAHGEWELGT PIAPSLDDPR SMAPLPGRMG SRMEPPPPSG PAATFGASAT AKISVDASLA  180
GAIIGKGGVH SKQICRQTGA KLSIREHESD PSLRNIELEG SFEQIKEASA MVRELISSLG  240
PVPGPAKTAG AHGGQGHPGS NYKTKLCDNF AKGSCTFGER CHFAHGAAEL RKSVV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469689.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_016744340.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-107C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0D2QIF20.0A0A0D2QIF2_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NZN80.0A0A1U8NZN8_GOSHI; zinc finger CCCH domain-containing protein 14-like
STRINGGorai.001G072800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-69C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]