PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G072200.1 | ||||||||
Common Name | B456_001G072200, LOC105787611 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 410aa MW: 43090.4 Da PI: 8.531 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 129.8 | 2.7e-40 | 81 | 209 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa+ ++tgt++++a+++ + s +ss+s+ s + Gorai.001G072200.1 81 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVVAATGTGTIPANFTsLNISLRSSGSTMSVPsql 171 789******************************************************************9998888888888866666444 PP TCP 89 .....................................k 89 Gorai.001G072200.1 172 rssgfnsnfsmqqrrslfpgiglettptflnfqsssnL 209 44455555555555566666666665555554444332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.0E-43 | 85 | 253 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.551 | 87 | 141 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MEGGGSDDHQ LHHHHQHRPT FPFQLLEKKQ DDNQPCSSSS SPPFPSLLPP SSSSSPSADQ 60 PNTSRSISSL QISPEPCKKP PPKRTSTKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH 120 KSDGETIEWL LQQAEPAVVA ATGTGTIPAN FTSLNISLRS SGSTMSVPSQ LRSSGFNSNF 180 SMQQRRSLFP GIGLETTPTF LNFQSSSNLN SMFQAKQELR DHNSSSLEIS ANEENSLGRK 240 RRPEQDLSSQ HQMGSYLLQS STGVIPAATH GQIPANFWMV TNSNNQVISG DPIWTFPSVN 300 SSALYRGTMS SGLHFMNFPA PMALLPGQQL GSSGVTSGAA GGGGGGGSTG ISAEGHLNIL 360 AGLNPYRQVS ESQASGPHSN NDGGGGGGAG GGGSAGGGDN RHDATSHQS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 336 | 347 | SGAAGGGGGGGS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular tissues of the embryo (PubMed:17953649). Expressed in young proliferating tissues (PubMed:21668538). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00396 | DAP | Transfer from AT3G47620 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527679 | 1e-86 | HQ527679.1 Gossypium herbaceum clone NBRI_A_EYI1BW401A35IF simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012469542.1 | 0.0 | PREDICTED: transcription factor TCP14-like | ||||
Swissprot | Q93Z00 | 1e-66 | TCP14_ARATH; Transcription factor TCP14 | ||||
TrEMBL | A0A0D2QHJ1 | 0.0 | A0A0D2QHJ1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G072200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3915 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47620.1 | 5e-65 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G072200.1 |
Entrez Gene | 105787611 |
Publications ? help Back to Top | |||
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