PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G067000.1

Common Name

B456_001G067000, LOC105786957

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 317aa MW: 34227.5 Da PI: 6.8728

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G067000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.7	1.2e-38	40	99	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+++ Gorai.001G067000.1 40 HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGILRNVPVGGGCRKAKRTK 99 6899****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-25	40	93	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-33	41	97	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.404	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MQDIHSIAGG CIFSGGGGGG GGGGGGGGDK RLRSHHHHNH QALKCPRCDS LNTKFCYYNN 60 YNLSQPRHFC KSCRRYWTKG GILRNVPVGG GCRKAKRTKT KASSETTAVA ASALPPPEQQ 120 HGDQRKANSH SSSESSSLTA TNSNVAVPNQ NNYSSAAGTA EAVTSHSNLI NVSEPKFYGN 180 PNNLGLEPGL LEQGSDCGIF PEIGSFTSLI TSSNNETMSF GFDKVLNGQA LEQGQWQQQH 240 QKMMRMGEDE INGGLLDQTV QVELSNMHSR SENGFGALDW QGNEDQGLFD LPNDVDKTYW 300 SQTQWPDQDH HGLYLP*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC136450	7e-38	AC136450.7 Medicago truncatula clone mth2-34d6, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468879.1	0.0	PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBL	A0A0D2PSL9	0.0	A0A0D2PSL9_GOSRA; Uncharacterized protein
STRING	Gorai.001G067000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4482	26	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-51	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Gorai.001G067000.1
Entrez Gene	105786957

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]