PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G064700.3 | ||||||||
Common Name | B456_001G064700, LOC105786810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YB | ||||||||
Protein Properties | Length: 134aa MW: 14683.7 Da PI: 4.3973 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 60.5 | 3.8e-19 | 11 | 81 | 3 | 73 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalat 73 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se+++ c+re+++ti+++ +l al + Gorai.001G064700.3 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCNREDKRTIAPEHVLKALEQ 81 6899**************************************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.7E-27 | 8 | 81 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.19E-29 | 12 | 119 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.3E-22 | 14 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MEPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESNE 60 VCNREDKRTI APEHVLKALE QDSLKGGKWS NGAEMTEEEA VAEQQRMFAE ARARMNGGAV 120 APKQPDPDPS LES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 2e-25 | 12 | 112 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012468750.1 | 2e-93 | PREDICTED: protein Dr1 homolog isoform X3 | ||||
Refseq | XP_016744146.1 | 2e-93 | PREDICTED: protein Dr1 homolog isoform X3 | ||||
Refseq | XP_017623288.1 | 2e-93 | PREDICTED: protein Dr1 homolog isoform X3 | ||||
Swissprot | P49592 | 8e-70 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A0D2QI18 | 4e-92 | A0A0D2QI18_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8NYV8 | 4e-92 | A0A1U8NYV8_GOSHI; protein Dr1 homolog isoform X3 | ||||
STRING | Gorai.001G064700.1 | 3e-88 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 3e-72 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G064700.3 |
Entrez Gene | 105786810 |
Publications ? help Back to Top | |||
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