PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G064700.2 | ||||||||
Common Name | B456_001G064700, LOC105786810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YB | ||||||||
Protein Properties | Length: 156aa MW: 17238.6 Da PI: 4.4199 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 75.2 | 1e-23 | 11 | 93 | 3 | 85 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se+++ c+re+++ti+++ +l al lGf +y+e++ + Gorai.001G064700.2 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCNREDKRTIAPEHVLKALEVLGFGKYIEEVYA 93 6899***************************************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.4E-39 | 8 | 139 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 7.42E-36 | 12 | 141 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.2E-22 | 14 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MEPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESNE 60 VCNREDKRTI APEHVLKALE VLGFGKYIEE VYAAYEQHKI ETLDSLKGGK WSNGAEMTEE 120 EAVAEQQRMF AEARARMNGG AVAPKQPDPD PSLES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 6e-36 | 12 | 134 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012468745.1 | 1e-112 | PREDICTED: protein Dr1 homolog isoform X2 | ||||
Refseq | XP_016744145.1 | 1e-112 | PREDICTED: protein Dr1 homolog isoform X2 | ||||
Refseq | XP_017623280.1 | 1e-112 | PREDICTED: protein Dr1 homolog isoform X2 | ||||
Swissprot | P49592 | 2e-89 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A0D2N3C6 | 1e-110 | A0A0D2N3C6_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8NZ32 | 1e-110 | A0A1U8NZ32_GOSHI; protein Dr1 homolog isoform X2 | ||||
STRING | Gorai.001G064700.1 | 1e-109 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 1e-93 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G064700.2 |
Entrez Gene | 105786810 |
Publications ? help Back to Top | |||
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