PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G061800.2

Common Name

B456_001G061800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 305aa MW: 34304.9 Da PI: 4.635

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G061800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.3	1.6e-10	107	129	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++++tG Ck+G +CkF+H+ Gorai.001G061800.2 107 EDCAYYMKTGLCKFGFNCKFNHP 129 89********************9 PP
2	zf-CCCH	31.1	3.9e-10	150	173	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++rtG Ck+G C+++H++ Gorai.001G061800.2 150 QECKYYLRTGGCKFGKACRYNHSK 173 58********************95 PP
3	zf-CCCH	39.9	7.1e-13	194	218	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ Gorai.001G061800.2 194 GEKECPYYMRNGSCKYGANCRFNHP 218 6789********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.44E-6	101	131	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.2E-4	103	130	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.235	103	131	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.4E-8	107	129	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.8E-4	109	128	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.925	146	174	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.0E-4	146	173	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.97E-6	148	174	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.6E-8	150	173	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.3E-5	152	173	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.201	192	220	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.7E-6	192	219	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-10	194	218	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.72E-7	195	221	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.3E-6	198	217	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MSQSEETTHT DSALLSLGLN STDPTPIPLD ESPSDLNHSV KETDHHENNL EQQLNNLDLK 60 EEDEEKDEVE TQNDVEEEED IIENENDDDV KKDEERRTIY PVRPEAEDCA YYMKTGLCKF 120 GFNCKFNHPV RRKNQAVKEK DESTEKTNQQ ECKYYLRTGG CKFGKACRYN HSKQNSSVSP 180 ILELNFLGLP IRKGEKECPY YMRNGSCKYG ANCRFNHPDP KLAGACEPPS GYGNGGSVSL 240 QAASQVNMVS WSAPMTLNDS AAYLPIMFSP TQGVPPPNPE WNGYQFGHFV ISRSEMLANV 300 SRVM*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.2767	0.0	flower\|seedling\| flowering

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468545.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 67-like
TrEMBL	A0A0D2PV43	0.0	A0A0D2PV43_GOSRA; Uncharacterized protein
STRING	Gorai.001G061800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-73	C3H family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G061800.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]