PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G061800.1 | ||||||||
Common Name | B456_001G061800, LOC105786580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 444aa MW: 49666.1 Da PI: 5.4639 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.7 | 2.6e-10 | 107 | 129 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++++tG Ck+G +CkF+H+ Gorai.001G061800.1 107 EDCAYYMKTGLCKFGFNCKFNHP 129 89********************9 PP | |||||||
2 | zf-CCCH | 30.5 | 6.2e-10 | 150 | 173 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++rtG Ck+G C+++H++ Gorai.001G061800.1 150 QECKYYLRTGGCKFGKACRYNHSK 173 58********************95 PP | |||||||
3 | zf-CCCH | 39.2 | 1.1e-12 | 194 | 218 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ Gorai.001G061800.1 194 GEKECPYYMRNGSCKYGANCRFNHP 218 6789********************9 PP | |||||||
4 | zf-CCCH | 26.9 | 8.2e-09 | 330 | 356 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++Ck++H++ Gorai.001G061800.1 330 PGQPECSYFLKTGDCKFKSNCKYHHPK 356 5789*********************96 PP | |||||||
5 | zf-CCCH | 37 | 5.6e-12 | 377 | 401 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G+Ck+G+ CkF H+ Gorai.001G061800.1 377 DQSICSYYSRYGICKFGPACKFDHS 401 6789********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.49E-6 | 101 | 131 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.235 | 103 | 131 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-4 | 103 | 130 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-8 | 107 | 129 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.2E-4 | 109 | 128 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.925 | 146 | 174 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-4 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-6 | 148 | 174 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-7 | 150 | 173 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 152 | 173 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.201 | 192 | 220 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-6 | 192 | 219 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-10 | 194 | 218 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.28E-6 | 195 | 221 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 198 | 217 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.333 | 329 | 357 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-4 | 329 | 356 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-6 | 331 | 356 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 334 | 358 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-6 | 373 | 401 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.53 | 375 | 403 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-4 | 375 | 402 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 377 | 401 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-5 | 379 | 402 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MSQSEETTHT DSALLSLGLN STDPTPIPLD ESPSDLNHSV KETDHHENNL EQQLNNLDLK 60 EEDEEKDEVE TQNDVEEEED IIENENDDDV KKDEERRTIY PVRPEAEDCA YYMKTGLCKF 120 GFNCKFNHPV RRKNQAVKEK DESTEKTNQQ ECKYYLRTGG CKFGKACRYN HSKQNSSVSP 180 ILELNFLGLP IRKGEKECPY YMRNGSCKYG ANCRFNHPDP KLAGACEPPS GYGNGGSVSL 240 QAASQVNMVS WSAPMTLNDS AAYLPIMFSP TQGVPPPNPE WNGYQTTLYP PLERGLHPTP 300 AYVMSNPSTE TTAYTHHQLQ MVVDDFPERP GQPECSYFLK TGDCKFKSNC KYHHPKNRVP 360 KPTPCALSDK GLPLRPDQSI CSYYSRYGIC KFGPACKFDH SIQATPPTVS GLDQPRPFSH 420 STATEQAGIA RSNRADTAVQ QSV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.2767 | 0.0 | flower|seedling| flowering |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012468545.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 67-like | ||||
Swissprot | Q9STM4 | 1e-137 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | A0A0D2QLD4 | 0.0 | A0A0D2QLD4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G061800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4176 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-134 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G061800.1 |
Entrez Gene | 105786580 |
Publications ? help Back to Top | |||
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