PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G053900.2
Common NameB456_001G053900, LOC105785701
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LFY
Protein Properties Length: 404aa    MW: 44711.3 Da    PI: 7.0513
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G053900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY623.92.9e-19013851386
             FLO_LFY   1 mdpeafsas.lfkwdpraaaaapparlleeaavseapleaaaaaaarklr......eleelfkayGvryltvakiaelGftvstLvdmkde 84 
                         mdpe+f++  +fkwdpr  +a++parl+e  a++++p+++a+aaaa  +       ++eelf+ayG+ry+t+akiaelGftv+tL++mk+e
  Gorai.001G053900.2   1 MDPETFASGsFFKWDPRGLMAPTPARLVEAVAAVPQPQAVAVAAAAAFMGrprelgGIEELFQAYGIRYYTAAKIAELGFTVNTLLGMKEE 91 
                         9****977559*********99999**999999998855555544444334667779********************************** PP

             FLO_LFY  85 elddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeet......aldalsqeglseepvqeekeaagsggeglg 169
                         eld++m+s+s+ifr++llvGeryGikaavraerrrleee+  ++rr+l+  d++t      aldalsq   +eepvq+ekeaagsgg+g  
  Gorai.001G053900.2  92 ELDEMMNSVSQIFRWELLVGERYGIKAAVRAERRRLEEED--SRRRHLVLGDTTTtttaanALDALSQ---EEEPVQQEKEAAGSGGGG-- 175
                         **************************************88..66666664444432221123444444...4789999*******9998.. PP

             FLO_LFY 170 eaelvaaeekkseeekkkaskkkqkrkkkkelkseededee.eeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqC 259
                         ++e+v         ++k++   ++++ +kk ++ ++ ++ e  ++d+++ ++g +g erqrehPfivtepgevargkknGLDYLf+LyeqC
  Gorai.001G053900.2 176 TWEMVIGGG-----RRKQQ---RRRKGQKKVVEVDNGDEFEgGDDDDENGDGGGGGYERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQC 258
                         999999883.....23333...22222333333334444440444445555677788********************************** PP

             FLO_LFY 260 refLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaar 350
                         r+fL+qvq+iak+rGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplv+iaar
  Gorai.001G053900.2 259 RDFLIQVQNIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYKPLVSIAAR 349
                         ******************************************************************************************* PP

             FLO_LFY 351 qgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
                         qgwdida+fnahprL+iWYvPtkLrqLCh+er+ a+
  Gorai.001G053900.2 350 QGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNGAA 385
                         ********************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016988.6E-2021384IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDPETFASGS FFKWDPRGLM APTPARLVEA VAAVPQPQAV AVAAAAAFMG RPRELGGIEE  60
LFQAYGIRYY TAAKIAELGF TVNTLLGMKE EELDEMMNSV SQIFRWELLV GERYGIKAAV  120
RAERRRLEEE DSRRRHLVLG DTTTTTTAAN ALDALSQEEE PVQQEKEAAG SGGGGTWEMV  180
IGGGRRKQQR RRKGQKKVVE VDNGDEFEGG DDDDENGDGG GGGYERQREH PFIVTEPGEV  240
ARGKKNGLDY LFHLYEQCRD FLIQVQNIAK DRGEKCPTKV TNQVFRYAKK AGASYINKPK  300
MRHYVHCYAL HCLDEEASNA LRRAFKERGE NVGAWRQACY KPLVSIAARQ GWDIDAIFNA  360
HPRLAIWYVP TKLRQLCHAE RNGAAAVAAG SSSVSGGHDH MGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1122233962183PROTEIN LEAFY
2vy2_A1e-1122233962183PROTEIN LEAFY
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In developing inflorescences, leaf primordia and very young leaves.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7951310.0JN795131.1 Gossypium hirsutum LFY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467290.10.0PREDICTED: floricaula/leafy homolog isoform X2
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA0A0D2N5T60.0A0A0D2N5T6_GOSRA; Uncharacterized protein
STRINGEOY226620.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-149floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]