PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G047400.1

Common Name

B456_001G047400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 847aa MW: 94651.1 Da PI: 7.6189

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G047400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.7	3.5e-09	217	279	18	81
trihelix 18 eerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 ++ rgk ++++ +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++++ e++ +y Gorai.001G047400.1 217 AVQSTRGKTRAGKDREVAEFLNKHGINRDAKTAGTKWDNMLGEFRKVYEWERGGEREQV-GKSY 279 55677899999*****************************************9965555.3445 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	1.43E-15	683	837	IPR011009	Protein kinase-like domain
CDD	cd00180	4.46E-11	697	834	No hit	No description
Gene3D	G3DSA:1.10.510.10	5.2E-7	698	835	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 847 aa Download sequence Send to blast
MGGNKGDATK KQTPQPTQQL SSSPKEPLEE SSESRQKHLQ QPSAVVVTAT GPPFISAPLY 60 VPTGATSPFE QQFESVNPKR SRYNSGQWKL LPSPSSLQSQ AQMAIITSES SPSPTNPINP 120 QTQAQTTAAS SSDAASSPPH SPLPSTTSGQ ETNKPEDQQF HHQFRKGKYV SPVWKPNEML 180 WLARAWRIQY QGGSDAPGSS SRSGHQEIGP LTGSDVAVQS TRGKTRAGKD REVAEFLNKH 240 GINRDAKTAG TKWDNMLGEF RKVYEWERGG EREQVGKSYF RLSPYERKLH RLPASFDEEV 300 FEELSQFMGP RMRTSQSRGA SGIASSDDGR SVLSGPRPLP PPPPFKVDEL PLSGFTERAQ 360 LPFAESSIRS MPPLEFQDPT DYYIGCLRVP PTILPGLFEL SWHLQEPLPE EYRFPLRKDV 420 YRDLPAGKEV LFTTTSELLD CRAMVYDVLS SIIRTNPSLS AATATSRDSF IGLWDDCINR 480 VISKFCSVEM VIIRKPSSSS TEPLQDQWPN VTGFVRNFCL WRGEETDQVR EGHPDPSSSL 540 VEKLLWTYMD LPYVLGYYAV GYMVTFCALS RSQDRILRTD LYSVDLSSPS ERLKALVPCC 600 RIAGLLPLLA DRCFNTISNV GSYKQFPFSD FERINLRNGS IMEMTPNTVT RSFSNKKKWA 660 AVKEIYDILD HRIPHSELIC RACEKDLVLV FKPRGCKFKP INCEQLVEAV KYVTKALVAL 720 HDLCFMHRDL GWDKVLRRSD TENEWFVCGF DEAVGAPQIY PHPVAGADTD ARGRHAPEMG 780 RGLHGVKVDV WGVGYLIKTC GLTNVPKMLR ELETRCLDQN PEQRPTAADC YHHLLQVQSA 840 SSGAPY*

Sequence ? help Back to Top

Protein Sequence Length: 847 aa Download sequence Send to blast

MGGNKGDATK KQTPQPTQQL SSSPKEPLEE SSESRQKHLQ QPSAVVVTAT GPPFISAPLY  60
VPTGATSPFE QQFESVNPKR SRYNSGQWKL LPSPSSLQSQ AQMAIITSES SPSPTNPINP  120
QTQAQTTAAS SSDAASSPPH SPLPSTTSGQ ETNKPEDQQF HHQFRKGKYV SPVWKPNEML  180
WLARAWRIQY QGGSDAPGSS SRSGHQEIGP LTGSDVAVQS TRGKTRAGKD REVAEFLNKH  240
GINRDAKTAG TKWDNMLGEF RKVYEWERGG EREQVGKSYF RLSPYERKLH RLPASFDEEV  300
FEELSQFMGP RMRTSQSRGA SGIASSDDGR SVLSGPRPLP PPPPFKVDEL PLSGFTERAQ  360
LPFAESSIRS MPPLEFQDPT DYYIGCLRVP PTILPGLFEL SWHLQEPLPE EYRFPLRKDV  420
YRDLPAGKEV LFTTTSELLD CRAMVYDVLS SIIRTNPSLS AATATSRDSF IGLWDDCINR  480
VISKFCSVEM VIIRKPSSSS TEPLQDQWPN VTGFVRNFCL WRGEETDQVR EGHPDPSSSL  540
VEKLLWTYMD LPYVLGYYAV GYMVTFCALS RSQDRILRTD LYSVDLSSPS ERLKALVPCC  600
RIAGLLPLLA DRCFNTISNV GSYKQFPFSD FERINLRNGS IMEMTPNTVT RSFSNKKKWA  660
AVKEIYDILD HRIPHSELIC RACEKDLVLV FKPRGCKFKP INCEQLVEAV KYVTKALVAL  720
HDLCFMHRDL GWDKVLRRSD TENEWFVCGF DEAVGAPQIY PHPVAGADTD ARGRHAPEMG  780
RGLHGVKVDV WGVGYLIKTC GLTNVPKMLR ELETRCLDQN PEQRPTAADC YHHLLQVQSA  840
SSGAPY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465877.1	0.0	PREDICTED: uncharacterized protein LOC105784438 isoform X2
TrEMBL	A0A0D2QKQ5	0.0	A0A0D2QKQ5_GOSRA; Uncharacterized protein
STRING	Gorai.001G047400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8356	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-07	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G047400.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]