PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G044000.1
Common NameB456_001G044000, LOC105770326
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 251aa    MW: 29244.7 Da    PI: 6.728
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G044000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.4e-161360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W +eEd++l+++v+ +G g+W+t++++ g+ R +k+c++rw +yl
  Gorai.001G044000.1 13 RGLWKPEEDLILKNYVETYGEGNWATVSKRSGLMRGGKSCRLRWKNYL 60
                        788*******************************************97 PP
2Myb_DNA-binding52.41.2e-1666111148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  Gorai.001G044000.1  66 RGGMSKEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 111
                         67789*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.911160IPR017930Myb domain
SMARTSM007178.1E-131262IPR001005SANT/Myb domain
SuperFamilySSF466898.07E-2812107IPR009057Homeodomain-like
PfamPF002494.3E-141360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-211467IPR009057Homeodomain-like
CDDcd001673.76E-101660No hitNo description
PROSITE profilePS5129425.60661115IPR017930Myb domain
SMARTSM007171.8E-1665113IPR001005SANT/Myb domain
PfamPF002495.4E-1566111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2368114IPR009057Homeodomain-like
CDDcd001674.67E-1269111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MENRKEKKSQ PKRGLWKPEE DLILKNYVET YGEGNWATVS KRSGLMRGGK SCRLRWKNYL  60
RPNIKRGGMS KEEEDLIIRM HKLLGNRWSL IAGRLPGRTD NEVKNYWNTH LNKKSLLGRK  120
RKTIDSNNQH NDNMEDNHIE NQDSKKPRQA HDSDHHPIFN TTDGFDLDGN KQEKDDESAA  180
AWMERAVRFF NYEYDLDYEM VGTPLMMHPD YSNFVFDEEP FTSYTDPFVL FEAFGTADCD  240
VGLGIQSFLP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23131147107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in the trichomes of new leaves. {ECO:0000269|PubMed:24803498}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6238505e-66JX623850.1 Gossypium hirsutum clone NBRI_GE71318 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446931.10.0PREDICTED: transcription factor MYB82-like
SwissprotQ9LTF74e-68MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A0D2N5C00.0A0A0D2N5C0_GOSRA; Uncharacterized protein
STRINGGorai.001G044000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.12e-70myb domain protein 82
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]