PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G042700.4 | ||||||||
Common Name | B456_001G042700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | YABBY | ||||||||
Protein Properties | Length: 133aa MW: 14636.5 Da PI: 8.1998 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 113.9 | 2.8e-35 | 8 | 123 | 6 | 135 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ + +++++++ ++++ +t+ Gorai.001G042700.4 8 APEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV----------QGASYATQDYRTDLGSSSKCNTKF 88 79*********************************************9999999984..........444444455555555555555555 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfike 135 s+ s+n +ee v+rPPekrqrvPsayn+fik Gorai.001G042700.4 89 SMRAPSKNATEERV----VNRPPEKRQRVPSAYNQFIKG 123 66555677776655....89*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.5E-42 | 8 | 123 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MSTCTNLAPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 WQDVQGASYA TQDYRTDLGS SSKCNTKFSM RAPSKNATEE RVVNRPPEKR QRVPSAYNQF 120 IKGDPKDQGQ QS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012458485.1 | 1e-87 | PREDICTED: axial regulator YABBY 5-like isoform X2 | ||||
Swissprot | Q8GW46 | 2e-56 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A0D2LQJ1 | 2e-94 | A0A0D2LQJ1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G042700.1 | 3e-85 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-58 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G042700.4 |
Publications ? help Back to Top | |||
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