PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G040700.2
Common NameB456_001G040700, LOC105777249
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 327aa    MW: 36781 Da    PI: 7.7008
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G040700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.7e-076387126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        +kt+ C  f+  GtC+ G+ C+FaHg
  Gorai.001G040700.2 63 FKTRMCAKFRL-GTCRNGEGCNFAHG 87
                        69*********.*************8 PP
2zf-CCCH28.52.6e-09124146325
                         S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                         ++lC+ ++ + +C+yGdrC+F H
  Gorai.001G040700.2 124 MKLCKKYYNGEECPYGDRCNFLH 146
                         689******66************ PP
3zf-CCCH41.32.6e-13209235127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC  +  tG+C++G++C+FaHg+
  Gorai.001G040700.2 209 WKTKLCTKWETTGHCPFGEKCHFAHGQ 235
                         8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-145895IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-86093IPR000571Zinc finger, CCCH-type
SMARTSM003560.0676288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.226289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-7121148IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015121148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023121149IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-7124146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-9124147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-16206239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-10207239IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723208236IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6208235IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10209235IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MNDWQFDPHS EFEQQQQQQQ QSPPFKRPRH SEDNQSNIVQ CTPTIPRMPS NPPTNKGTTN  60
IFFKTRMCAK FRLGTCRNGE GCNFAHGIED LRQPPPNWQE LVGGREEERP SGNWDDDQKI  120
IHRMKLCKKY YNGEECPYGD RCNFLHEDPA KFRDDMGRFR ESSAISIGTT APPAGHGTAS  180
EQSEGNRPLN GGSSDAFRGN TKPVYPVYWK TKLCTKWETT GHCPFGEKCH FAHGQTELQG  240
MNGRIDGDFG NMGSGLTRIG SVSTKIHNLP ANDPPPVTSS ALSLDEKAQA KNCLFKWKGP  300
RKINRIYGDW LDDMPLVHNL PSQVES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5277611e-70HQ527761.1 Gossypium herbaceum clone NBRI_C_EYT27PB01BXVU7 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455892.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
RefseqXP_012455972.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
SwissprotQ9LT812e-98C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0D2LUH30.0A0A0D2LUH3_GOSRA; Uncharacterized protein
TrEMBLA0A0D2N5920.0A0A0D2N592_GOSRA; Uncharacterized protein
STRINGGorai.001G040700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-100C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]