PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.001G040700.1 | ||||||||
Common Name | B456_001G040700, LOC105777249 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 358aa MW: 40286.9 Da PI: 7.4797 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.5 | 4.1e-07 | 94 | 118 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f+ GtC+ G+ C+FaHg Gorai.001G040700.1 94 FKTRMCAKFRL-GTCRNGEGCNFAHG 118 69*********.*************8 PP | |||||||
2 | zf-CCCH | 28.3 | 3e-09 | 155 | 177 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ ++ + +C+yGdrC+F H Gorai.001G040700.1 155 MKLCKKYYNGEECPYGDRCNFLH 177 689******66************ PP | |||||||
3 | zf-CCCH | 41.1 | 2.9e-13 | 240 | 266 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + tG+C++G++C+FaHg+ Gorai.001G040700.1 240 WKTKLCTKWETTGHCPFGEKCHFAHGQ 266 8************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-14 | 89 | 126 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-8 | 91 | 124 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.22 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.067 | 93 | 119 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.023 | 152 | 180 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-7 | 152 | 179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0015 | 152 | 179 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.7E-7 | 155 | 177 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-9 | 155 | 178 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-16 | 237 | 270 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-10 | 238 | 270 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.723 | 239 | 267 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-6 | 239 | 266 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-10 | 240 | 266 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 358 aa Download sequence Send to blast |
MNYPESRSSF MRTPQSTYAG SDAIGIWPEF PMNDWQFDPH SEFEQQQQQQ QQSPPFKRPR 60 HSEDNQSNIV QCTPTIPRMP SNPPTNKGTT NIFFKTRMCA KFRLGTCRNG EGCNFAHGIE 120 DLRQPPPNWQ ELVGGREEER PSGNWDDDQK IIHRMKLCKK YYNGEECPYG DRCNFLHEDP 180 AKFRDDMGRF RESSAISIGT TAPPAGHGTA SEQSEGNRPL NGGSSDAFRG NTKPVYPVYW 240 KTKLCTKWET TGHCPFGEKC HFAHGQTELQ GMNGRIDGDF GNMGSGLTRI GSVSTKIHNL 300 PANDPPPVTS SALSLDEKAQ AKNCLFKWKG PRKINRIYGD WLDDMPLVHN LPSQVES* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ527761 | 1e-121 | HQ527761.1 Gossypium herbaceum clone NBRI_C_EYT27PB01BXVU7 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455892.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 39 | ||||
Refseq | XP_012455972.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 39 | ||||
Swissprot | Q9LT81 | 1e-100 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A0D2N592 | 0.0 | A0A0D2N592_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G040700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10066 | 25 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19360.1 | 1e-102 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.001G040700.1 |
Entrez Gene | 105777249 |
Publications ? help Back to Top | |||
---|---|---|---|
|