PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G040700.1
Common NameB456_001G040700, LOC105777249
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 358aa    MW: 40286.9 Da    PI: 7.4797
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G040700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-0794118126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+ C  f+  GtC+ G+ C+FaHg
  Gorai.001G040700.1  94 FKTRMCAKFRL-GTCRNGEGCNFAHG 118
                         69*********.*************8 PP

2zf-CCCH28.33e-09155177325
                         S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                         ++lC+ ++ + +C+yGdrC+F H
  Gorai.001G040700.1 155 MKLCKKYYNGEECPYGDRCNFLH 177
                         689******66************ PP

3zf-CCCH41.12.9e-13240266127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC  +  tG+C++G++C+FaHg+
  Gorai.001G040700.1 240 WKTKLCTKWETTGHCPFGEKCHFAHGQ 266
                         8************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.4E-1489126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-891124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2293120IPR000571Zinc finger, CCCH-type
SMARTSM003560.06793119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023152180IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-7152179IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015152179IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-7155177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-9155178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-16237270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-10238270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723239267IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6239266IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-10240266IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MNYPESRSSF MRTPQSTYAG SDAIGIWPEF PMNDWQFDPH SEFEQQQQQQ QQSPPFKRPR  60
HSEDNQSNIV QCTPTIPRMP SNPPTNKGTT NIFFKTRMCA KFRLGTCRNG EGCNFAHGIE  120
DLRQPPPNWQ ELVGGREEER PSGNWDDDQK IIHRMKLCKK YYNGEECPYG DRCNFLHEDP  180
AKFRDDMGRF RESSAISIGT TAPPAGHGTA SEQSEGNRPL NGGSSDAFRG NTKPVYPVYW  240
KTKLCTKWET TGHCPFGEKC HFAHGQTELQ GMNGRIDGDF GNMGSGLTRI GSVSTKIHNL  300
PANDPPPVTS SALSLDEKAQ AKNCLFKWKG PRKINRIYGD WLDDMPLVHN LPSQVES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5277611e-121HQ527761.1 Gossypium herbaceum clone NBRI_C_EYT27PB01BXVU7 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455892.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
RefseqXP_012455972.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
SwissprotQ9LT811e-100C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0D2N5920.0A0A0D2N592_GOSRA; Uncharacterized protein
STRINGGorai.001G040700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-102C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]