PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G040300.1
Common NameB456_001G040300, LOC105776964
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 258aa    MW: 29192.2 Da    PI: 8.3676
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G040300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.8e-1622971599
                        -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3 15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                         l++p +f++++ +g+ ++  +  +  + gr+W+vk+  r ++    +++GW++F+++++L +gDf+vF++ g++ f   v vf++
  Gorai.001G040300.1 22 HLSIPLSFFKDYlKGQINC--ESAVLRSYGRTWSVKI--RDRR----FEDGWQDFARDHDLHVGDFLVFRYGGNMVF--DVVVFDT 97
                        599*********9555444..5667778*********..7777....9***********************999999..7777765 PP
2B3542.9e-17141229697
                         ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                  B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         ++  ++ks rl +p+kfa++++++  +s + +l de+grsW   ++ + ++g++++++GW++ +  n L  +D v ++l+g ++ ++ +k+
  Gorai.001G040300.1 141 LTLESMKSFRLNIPRKFARSNDLD--RSCETVLVDEQGRSWMASIRLKDSDGQVYIGRGWRNICIGNSLGLKDCVKLELIG-NGITPIFKL 228
                         4778999***************99..5668*************************************************99.566677776 PP

                         E CS
                  B3  97 f 97 
                         +
  Gorai.001G040300.1 229 Y 229
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-216100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-208105IPR015300DNA-binding pseudobarrel domain
CDDcd100173.25E-201196No hitNo description
SMARTSM010195.2E-181398IPR003340B3 DNA binding domain
PfamPF023629.3E-132294IPR003340B3 DNA binding domain
PROSITE profilePS5086312.2522398IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-18132226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-18134230IPR015300DNA-binding pseudobarrel domain
CDDcd100172.29E-17135230No hitNo description
PROSITE profilePS5086311.575136232IPR003340B3 DNA binding domain
SMARTSM010195.7E-17137232IPR003340B3 DNA binding domain
PfamPF023622.4E-15141229IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSNALFSPTI PHFFQPLLPG FHLSIPLSFF KDYLKGQINC ESAVLRSYGR TWSVKIRDRR  60
FEDGWQDFAR DHDLHVGDFL VFRYGGNMVF DVVVFDTSAC QRQYPLLATQ TQQPAKEIGK  120
QHEKRTSTSV TLESPHFVSN LTLESMKSFR LNIPRKFARS NDLDRSCETV LVDEQGRSWM  180
ASIRLKDSDG QVYIGRGWRN ICIGNSLGLK DCVKLELIGN GITPIFKLYK VASDSDAKKL  240
PNCSGSNAVV QEDQPEF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455444.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A0D2PLI60.0A0A0D2PLI6_GOSRA; Uncharacterized protein
STRINGGorai.001G040300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-48B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]