PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G032200.3

Common Name

B456_001G032200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 336aa MW: 37152.7 Da PI: 4.9061

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G032200.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	81.5	8.4e-26	193	249	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk+ + +rsYY+Ct+++C+vkk +e+s++ ++v+ei+++g H he Gorai.001G032200.3 193 SDGYNWRKYGQKQVKSPKGSRSYYKCTFSNCQVKK-IECSDQTGHVIEIVNKGIHSHE 249 8******************************98.*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-20	189	251	IPR003657	WRKY domain
SuperFamily	SSF118290	9.29E-20	190	251	IPR003657	WRKY domain
SMART	SM00774	1.0E-23	192	250	IPR003657	WRKY domain
PROSITE profile	PS50811	16.49	193	251	IPR003657	WRKY domain
Pfam	PF03106	6.8E-17	194	248	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MAETESQAKR HEGKQYDNSE GEEEEEEEEE EVDELEDEEE EEEEGVSRVN ESHGAGTAPS 60 SDAEVRASKL ETLTNDDRCE RLRENPTSEL KEGAESKEQV KIAHQKVLPS LAVQRAEAPK 120 QHLLQSSVSP TSSSQPSPTS ITQDISSPPT PTLPAQSHLD QKVNGASPPV ANQQNPSNLK 180 MLSFVPVVKT PVSDGYNWRK YGQKQVKSPK GSRSYYKCTF SNCQVKKIEC SDQTGHVIEI 240 VNKGIHSHEP PRKMNFTREN NILSSAVPLS IVREQPSRIP NDSDPSTSSK ESLPEPTVHT 300 ERKRQCSSGS DGHGDVQMKK EFLSEAEPNK RQAFP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669760	0.0	KF669760.1 Gossypium hirsutum WRKY transcription factor 10 (WRKY10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012443066.1	0.0	PREDICTED: probable WRKY transcription factor 32
TrEMBL	A0A0D2PII2	0.0	A0A0D2PII2_GOSRA; Uncharacterized protein
STRING	Gorai.001G032200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30935.1	9e-46	WRKY DNA-binding protein 32

Link Out ? help Back to Top
Phytozome	Gorai.001G032200.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]