PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G032200.2
Common NameB456_001G032200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 380aa    MW: 41854.2 Da    PI: 5.8421
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G032200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.31e-25193249259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +DgynWrKYGqK+vk+ + +rsYY+Ct+++C+vkk +e+s++ ++v+ei+++g H he
  Gorai.001G032200.2 193 SDGYNWRKYGQKQVKSPKGSRSYYKCTFSNCQVKK-IECSDQTGHVIEIVNKGIHSHE 249
                         8********************************98.*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-20189251IPR003657WRKY domain
SuperFamilySSF1182901.14E-19190251IPR003657WRKY domain
SMARTSM007741.0E-23192250IPR003657WRKY domain
PROSITE profilePS5081116.49193251IPR003657WRKY domain
PfamPF031068.2E-17194248IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-6348376IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MAETESQAKR HEGKQYDNSE GEEEEEEEEE EVDELEDEEE EEEEGVSRVN ESHGAGTAPS  60
SDAEVRASKL ETLTNDDRCE RLRENPTSEL KEGAESKEQV KIAHQKVLPS LAVQRAEAPK  120
QHLLQSSVSP TSSSQPSPTS ITQDISSPPT PTLPAQSHLD QKVNGASPPV ANQQNPSNLK  180
MLSFVPVVKT PVSDGYNWRK YGQKQVKSPK GSRSYYKCTF SNCQVKKIEC SDQTGHVIEI  240
VNKGIHSHEP PRKMNFTREN NILSSAVPLS IVREQPSRIP NDSDPSTSSK ESLPEPTVHT  300
ERKRQCSSGS DGHGDVQMKK EFLSEAEPNK RRKKGDAVCA GSVVKAGKKP KFVVHAAGDV  360
GISGDGYRWR KYGQKMELL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697600.0KF669760.1 Gossypium hirsutum WRKY transcription factor 10 (WRKY10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443066.10.0PREDICTED: probable WRKY transcription factor 32
TrEMBLA0A0D2QH630.0A0A0D2QH63_GOSRA; Uncharacterized protein
STRINGGorai.001G032200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.19e-71WRKY DNA-binding protein 32
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]