PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G030600.2 | ||||||||
Common Name | B456_001G030600, LOC105766286 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARR-B | ||||||||
Protein Properties | Length: 660aa MW: 72307.8 Da PI: 5.6108 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.2 | 9.2e-29 | 202 | 255 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av++L G +kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl Gorai.001G030600.2 202 KPRVVWSVELHRKFVAAVNHL-GLDKAVPKKILDLMNVEGLTRENVASHLQKYRL 255 79*******************.********************************8 PP | |||||||
2 | Response_reg | 80.2 | 7e-27 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl vdD+p+ +++l ++l k +y +v+++ ++ +al++l+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++ +++ + Gorai.001G030600.2 20 VLAVDDDPICLKVLGTLLLKCQY-QVTTTNQAISALKMLRENRnrYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTKLVMKG 108 799********************.***************999889*******************87754.558****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +eel + Gorai.001G030600.2 109 ITHGACDYLLKPVRIEELKN 128 *****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.3E-170 | 1 | 658 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 2.6E-42 | 17 | 172 | No hit | No description |
SuperFamily | SSF52172 | 2.28E-35 | 17 | 141 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 8.3E-33 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.781 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.6E-24 | 20 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.59E-28 | 21 | 133 | No hit | No description |
SuperFamily | SSF46689 | 7.17E-20 | 199 | 259 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.375 | 199 | 258 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-30 | 200 | 260 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.5E-25 | 202 | 255 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-7 | 204 | 254 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 660 aa Download sequence Send to blast |
MGGSNREDEA LDRFPVGMRV LAVDDDPICL KVLGTLLLKC QYQVTTTNQA ISALKMLREN 60 RNRYDLVISD VNMPDMDGFK LLELVGLEMD LPVIMLSAHS DTKLVMKGIT HGACDYLLKP 120 VRIEELKNIW QHVVRRKKPD SKDRVNALNQ DKASGGIGEA VQTSTSSSDQ KFNKKRKDQN 180 EDEEDDGEDN EHENDDPSTQ KKPRVVWSVE LHRKFVAAVN HLGLDKAVPK KILDLMNVEG 240 LTRENVASHL QKYRLYLKRL SSVATQQANM VAALGGKDPS YLRMGSLDGF GDFRTLTGSG 300 RLSSATLSSY QPSGMFGRLN SSAALNLRGI SSGVIQQGHP QTLSNSINGL GKIQPVGLPA 360 NQNQNGTLFQ GIPTSIELNQ LLQNKSANHF GELNPVNNPN VFGVATNFPD ARMTVGSSSS 420 SLSTPSGSPL LLQANTQQAQ RSGAFGNQSS LDVASLNQES FDMGVHGFSN FVDNGRCHEN 480 WQNTVQLSSF PSNSLSTCEA FSHEQLHTNN LQESISWRSS HLNDNPIDLS ASMANAGLED 540 SRGDMQCQIS PSNNVIHNID YAAKQQWGEN SSFAGVDSLV AGAPYVQHLE AGKLAFNTKL 600 RSNEDILFEQ RKPQNEFSQN NFETLDVISS PMIKPEQYNE TGMMEGELGY DAFPLGSCI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-26 | 198 | 261 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ525107 | 2e-67 | HQ525107.1 Gossypium herbaceum clone NBRI_A_EYI1BW401BL3EZ simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012441162.1 | 0.0 | PREDICTED: two-component response regulator ARR12-like | ||||
Swissprot | Q6K8X6 | 1e-146 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | A0A0D2PU23 | 0.0 | A0A0D2PU23_GOSRA; Two-component response regulator | ||||
STRING | Gorai.001G030600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-130 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G030600.2 |
Entrez Gene | 105766286 |
Publications ? help Back to Top | |||
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