PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G028200.1 | ||||||||
Common Name | B456_001G028200, LOC105764005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 1012aa MW: 111491 Da PI: 4.7146 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.2 | 2.2e-19 | 39 | 85 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+q+ g++Wk+Ia+++ Rt+ qc +rwqk+l Gorai.001G028200.1 39 KGQWTPEEDEILRKAVQQFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 85 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 67.1 | 3e-21 | 91 | 137 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEdel++++v+++G+++W+tIa++++ gR +kqc++rw+++l Gorai.001G028200.1 91 KGPWSKEEDELIIELVNKFGPKNWSTIAQHLP-GRIGKQCRERWHNHL 137 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 49.9 | 7.2e-16 | 143 | 185 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ ++ ++ gRt++ +k++w+ Gorai.001G028200.1 143 KEAWTQEEELALIRAHQVYGNK-WAELSKFLP-GRTDNAIKNHWN 185 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.826 | 34 | 85 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.9E-19 | 37 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-16 | 38 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 39 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-24 | 41 | 96 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.44E-15 | 42 | 85 | No hit | No description |
PROSITE profile | PS51294 | 33.067 | 86 | 141 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-32 | 88 | 184 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-20 | 90 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-20 | 91 | 137 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-17 | 93 | 137 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-28 | 97 | 140 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.4E-22 | 141 | 192 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-16 | 142 | 190 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.316 | 142 | 192 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.5E-14 | 143 | 186 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.16E-12 | 145 | 185 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1012 aa Download sequence Send to blast |
MDGDRTTSTP SVVPSISDGA QRMRAFHGRT SGPTRRSTKG QWTPEEDEIL RKAVQQFKGK 60 NWKKIAECFK DRTDVQCLHR WQKVLNPELV KGPWSKEEDE LIIELVNKFG PKNWSTIAQH 120 LPGRIGKQCR ERWHNHLNPA INKEAWTQEE ELALIRAHQV YGNKWAELSK FLPGRTDNAI 180 KNHWNSSVKK KVDSYVASGL LEQFQFPLLT NQSQSMPSSS SRIQRNVDDS GAKSRTEADD 240 ISECSQEPTM AGCSQTTSDL ANAAVHTREH SHLTEISGVG KEKNSCPAPC SEEYYPSLED 300 VSFSIPEIPG EAGYSTCGDY QFGLTNLPNP SSLELGPESS GFKNHCIDTS RCHEVMNVAL 360 QTSVGLNAPT SFINTVTTSD KQEHMLITDD ECCRVLFSET VTDGCFVSED LTQGYNMVES 420 SSQASDIQKS ETGALQSNCP SRSEVLPTSC CQPFVPPLIS VEDGTTLIYG RELGQLTGQP 480 FETQEQELTM NVRDGFICTS DDHTYGTDMQ ERSYLDKDSP KLVPVNTFGS ESNAMQTCPI 540 VDDKPNLPAE QDEGGLCYEP PRFPSLDIPF FSCDLISSGS DKQQEYSPLG IRQLMMSSMN 600 CISPFRLSDS PLWDDSPDAK LKSAAKTFTG TPSILKKRHH DLLSPLSERK CGKKLETDMT 660 SNLSKEFSCL DVMLDASGTG NTSQESPSEC KTKSGVFIEE KENLCQAVDQ EQYNGGDHTE 720 PLDDEGQKKD SNGINSQGDI EKEACVTDAK DKTYANASDK IVQRPPEVLV EHNLNDLLLF 780 SPDHVGLKAD RPLLSSSTLT PRNQGLASEC FSGNACIIVS SPTPQIKNSE SQSISSATLE 840 NLADNAGNGA AIENYNMFSE TPLKRSIESS SAWKSPWFIN SFVPGPRIDT EITIEDIGYL 900 MSPPDRSYDA IGLMKQLSEH TAATYADALE VLGNETPESI VKGRRSNNSK MDKENNQMET 960 QSHLASDILV ERRILDFSEC GTPGKGTENR KSSTAVSFSS PTSSYLLKGC R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-70 | 39 | 192 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-70 | 39 | 192 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012437928.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
Refseq | XP_012437996.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
TrEMBL | A0A0D2LU27 | 0.0 | A0A0D2LU27_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G028200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4674 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G028200.1 |
Entrez Gene | 105764005 |
Publications ? help Back to Top | |||
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