PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G026800.1
Common NameB456_001G026800, LOC105762748
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92515 Da    PI: 6.418
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G026800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.3e-182078357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le+l++++++ps  +r++L ++     +++ +q+kvWFqNrR +ek+
  Gorai.001G026800.1 20 KYVRYTPEQVEALERLYYECPKPSSMRRQQLIREYpilsNIEPKQIKVWFQNRRCREKQ 78
                        5679*****************************************************97 PP
2START186.11.8e-581663742205
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +a e+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++v+s+g  g+
  Gorai.001G026800.1 166 IADETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPT-RVAEILKDRPSWFRDCRAVDVINVLSTGngGT 255
                         68899*****************************************************.8888888888********************** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ +++
  Gorai.001G026800.1 256 IELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPNmppAANFVRAEMLPSGYLIRPCEGGGSIIHVVDHMDLEPWSV 346
                         ************************************************9999*************************************** PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqce 205
                         +++lr+l++s++  ++kt++a+l+++++
  Gorai.001G026800.1 347 PEVLRPLYESSTLLAQKTTMAALRHLRQ 374
                         ***********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.8391579IPR001356Homeobox domain
SMARTSM003892.6E-141783IPR001356Homeobox domain
CDDcd000861.40E-152080No hitNo description
SuperFamilySSF466898.13E-162083IPR009057Homeodomain-like
PfamPF000461.6E-152178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-172278IPR009057Homeodomain-like
CDDcd146861.15E-672111No hitNo description
PROSITE profilePS5084826.466156384IPR002913START domain
CDDcd088752.55E-83160375No hitNo description
Gene3DG3DSA:3.30.530.201.3E-24164371IPR023393START-like domain
SMARTSM002341.7E-44165375IPR002913START domain
SuperFamilySSF559611.29E-38165377No hitNo description
PfamPF018525.8E-56166374IPR002913START domain
PfamPF086707.0E-50700840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MMAVTSSCKE GNKIAMDNGK YVRYTPEQVE ALERLYYECP KPSSMRRQQL IREYPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SQLVCEKSYF  120
RQQSQQQAGL ATTDTSCDSV VTSGHQHHLT PQHPPRDASP AGLLSIADET LTEFLSKATG  180
TAVEWVQMPG MKPGPDSIGI VAISHGCTGV AARACGLVGL DPTRVAEILK DRPSWFRDCR  240
AVDVINVLST GNGGTIELLY MQLYAPTTLA PARDFWLLRY TSVLEDGSLV VCERSLNNTQ  300
NGPNMPPAAN FVRAEMLPSG YLIRPCEGGG SIIHVVDHMD LEPWSVPEVL RPLYESSTLL  360
AQKTTMAALR HLRQISQEIS QPNVTGWGRR PAALRALSQK LSKGFNEAVN GFTDEGWSML  420
ESDGADDITL LVNSSPGKMM GINLSYSNGF PSVGTAVLCA KASMLLQNVP PAILLRFLRE  480
HRSEWADSGI DAYSAAAIKA GPCSLPMSRG GGFGGQVILP LAHTIEHEEF MEVIKLENMG  540
HYRDDMIMPG DIFLLQLCSG VDENAVGSCA ELIFAPIDAS FSDDALIIPS GFRIIPLDSG  600
TDASSPSRTL DLASTLEVGT AGNQTTGDRS GRCGNSKSVM TIAFQFVYEI HLQENIAAMA  660
RQYVRSIIAS VQRVALALSP SNFGSHAGFQ SPPGSPEAQT LARWICQSYR CFLRMELLKH  720
EGTESILKSL WHHTDAILCC SMKAPPVFMF GNQAGLDMLE TTLVALQNVS LEKIFDENGR  780
KALFAEFPQV MQQGFMCLQG GICLSSMGRA VSYERAVAWK VVNDEENAHC VCFMFINWSF  840
V*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the procambial cells and the developing vascular system of embryos, roots and shoots. Expressed during the early stages of revascularization after cutting experiment. {ECO:0000269|PubMed:12447534, ECO:0000269|PubMed:8575317}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436119.10.0PREDICTED: homeobox-leucine zipper protein ATHB-8-like
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A0D2PKY90.0A0A0D2PKY9_GOSRA; Uncharacterized protein
STRINGGorai.001G026800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  4. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  5. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  6. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  7. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  8. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  9. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]