PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G024400.1
Common NameB456_001G024400, LOC105804617
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 360aa    MW: 40029.9 Da    PI: 7.9825
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G024400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.3e-08125146426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         + C++f++ G Ck Gd+C FaHg
  Gorai.001G024400.1 125 SACPDFRK-GNCKKGDSCEFAHG 146
                         67******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.00578110IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5121147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788122148IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-6125146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-6125148IPR000571Zinc finger, CCCH-type
SMARTSM0035632156179IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MMIRKPITRS FPTVNIPDWE PLNDSADNFP AVGFNCNATC SPCPVEYLAA LRRYLPSNDL  60
EPDTLSDDSD VHIIDAFSCD HFRMYEFKVR RCARGRSHDW TACPYAHPGE KARRRDPRKF  120
HYSGSACPDF RKGNCKKGDS CEFAHGVFEC WLHPTRYRTQ PCKDGTCCKR RVCFFAHTPE  180
QLRVLPQQSP RGNGSGSGSS DMDYFGSPIR YRLDYVSSPT SILASPPISP PSDSPPTSPS  240
GSFNSVSELT SSVRNLQIGK AKMGTTCSRG SCFVSPRSSM LRPGSPLTPT RTPTRSGLSK  300
FELWESNNAF DEPAMERVES GRDLRTRMYA KLSEENSLDL LDPTGSCPDV GWVSELVGY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492788.10.0PREDICTED: zinc finger CCCH domain-containing protein 23-like
SwissprotQ9M0G21e-108C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A0D2PTS00.0A0A0D2PTS0_GOSRA; Uncharacterized protein
STRINGGorai.001G024400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-102C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]