PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G020300.2

Common Name

B456_001G020300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 480aa MW: 54325.9 Da PI: 8.6916

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G020300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.1	4.9e-23	411	477	1	67
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 rW+ ev aLi++r ++e+++r+ lk+p We+vs+ m++ g++rs+k+Ckekwen+nk+++k ke+ Gorai.001G020300.2 411 RWPIAEVEALIQVRCDLESKFREPGLKGPVWEQVSSLMSSFGYQRSAKKCKEKWENINKYFRKSKEN 477 8**************************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.411	408	468	IPR017877	Myb-like domain
Pfam	PF13837	7.7E-17	410	477	No hit	No description
CDD	cd12203	1.21E-24	410	475	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MHPIKYGAHH HHHHHHHHLQ QQQFMEDDDA SSSDSIFFIS NPHNHQQQPV FPYPLHSQQH 60 NKQHENPVTH QLFHHQFQPF QHPEPVHHHN QQQPFLAVNF KLGLNENSGK KEAALPLNPQ 120 QNGATFLHGN EQQQQHSLFL PRCLPPQEDS PIKEPFWKPL NRLDNRQCSA DGAKMVEGTK 180 YNKVLQQPGQ STSERSRNLD SKYGLFGELE AIYGLGKRGE AAQAGSGSAL TGENSPANVG 240 PSMNLTKFQE HDVVGANGGG GNVVATGVDH GSEASIGKEA SLRKVQKKKR KMKMKEQLSS 300 MVVAFESLVK QVTDHQECLH KRFLEFIERM DKERSVKEES WRQQEAEKRN REAVARAHEQ 360 ALASSREALI VSYLEKITGE SINLPGKTPL LQQPGNAMEP FNGVKVDNSS RWPIAEVEAL 420 IQVRCDLESK FREPGLKGPV WEQVSSLMSS FGYQRSAKKC KEKWENINKY FRKSKENVT*

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MHPIKYGAHH HHHHHHHHLQ QQQFMEDDDA SSSDSIFFIS NPHNHQQQPV FPYPLHSQQH  60
NKQHENPVTH QLFHHQFQPF QHPEPVHHHN QQQPFLAVNF KLGLNENSGK KEAALPLNPQ  120
QNGATFLHGN EQQQQHSLFL PRCLPPQEDS PIKEPFWKPL NRLDNRQCSA DGAKMVEGTK  180
YNKVLQQPGQ STSERSRNLD SKYGLFGELE AIYGLGKRGE AAQAGSGSAL TGENSPANVG  240
PSMNLTKFQE HDVVGANGGG GNVVATGVDH GSEASIGKEA SLRKVQKKKR KMKMKEQLSS  300
MVVAFESLVK QVTDHQECLH KRFLEFIERM DKERSVKEES WRQQEAEKRN REAVARAHEQ  360
ALASSREALI VSYLEKITGE SINLPGKTPL LQQPGNAMEP FNGVKVDNSS RWPIAEVEAL  420
IQVRCDLESK FREPGLKGPV WEQVSSLMSS FGYQRSAKKC KEKWENINKY FRKSKENVT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	281	290	LRKVQKKKRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00651	PBM	Transfer from LOC_Os02g01380	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012487856.1	0.0	PREDICTED: trihelix transcription factor GTL1-like
TrEMBL	A0A0D2LTM9	0.0	A0A0D2LTM9_GOSRA; Uncharacterized protein
STRING	Gorai.001G020300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	3e-39	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G020300.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]