PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G014200.2

Common Name

B456_001G014200, LOC105794462

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 301aa MW: 33770 Da PI: 9.2228

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G014200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.8	1.3e-31	163	219	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVN+KQy++Il+RR +Rakle ++kl ksrkpylheSRh hA++R RgsgGrF Gorai.001G014200.2 163 DEPIYVNPKQYHGILRRRRHRAKLETRNKL-VKSRKPYLHESRHLHAMNRIRGSGGRF 219 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.5E-35	161	222	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.805	162	222	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.3E-27	164	219	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.5E-22	165	187	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.5E-22	196	219	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MASRVRILPK ENLLISCPPW WNSNEQQFVE IVPQNVSLKK AENHSQLYHN AKRFDLQLLD 60 HEPTLAEAGV TGVNNSQCNS SESGQVESCR KDIEGQTKPV YLLNNPNTLL SPSHPNYNRS 120 MACAQYPYTD AYFTGLFTPY GQQTIMTGTA PTRIPLPLDL AEDEPIYVNP KQYHGILRRR 180 RHRAKLETRN KLVKSRKPYL HESRHLHAMN RIRGSGGRFL SKKKPQRSDP TSIYISDIGC 240 LDQKDNNRSE LESRCSHTAE YGGSCTSCSH ISSITNNGGD ISRRAVSSCN GIQNCASLVR 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	6e-20	163	233	2	75	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012479556.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-5-like isoform X2
TrEMBL	A0A0D2PK97	0.0	A0A0D2PK97_GOSRA; Uncharacterized protein
STRING	Gorai.001G014200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.1	3e-38	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Gorai.001G014200.2
Entrez Gene	105794462

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]