PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G013000.3
Common NameB456_001G013000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 239aa    MW: 26028.4 Da    PI: 9.2887
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G013000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.8e-13556147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                        +++WT+eE+e l  +v+++G+g+Wk+I r          R+  ++k++w+++
  Gorai.001G013000.3  5 KQKWTAEEEEALRAGVAKYGKGNWKLIQRDPElspflFARSNIDLKDKWRNL 56
                        79****************************99999*977***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.901157IPR017930Myb domain
SuperFamilySSF466898.61E-16257IPR009057Homeodomain-like
SMARTSM007174.2E-8459IPR001005SANT/Myb domain
PfamPF002497.6E-10556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-14556IPR009057Homeodomain-like
CDDcd116607.40E-21656No hitNo description
SuperFamilySSF467859.8E-7105141IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.6E-8108146IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.1E-6108142IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGNPKQKWTA EEEEALRAGV AKYGKGNWKL IQRDPELSPF LFARSNIDLK DKWRNLSGGP  60
GGHGSREKSR ASKPKPSSDG SQGAVVVKQT ALPKPLVDDS SKSFAPNRYN EMIIEAISAL  120
KEPNGSDNRA IVGYIEVQNR YKIRKDETFG MKTASPKQKG TKLKQSQNPG HKTCDAVEEA  180
SMTAAYLIAE AENKSFVAAE AVKEAERVSK MAEDADSLLQ LAKEIFETCS QGEIVLVA*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477629.11e-170PREDICTED: telomere repeat-binding factor 4-like
RefseqXP_016719734.11e-170PREDICTED: telomere repeat-binding factor 4-like
SwissprotF4I7L14e-51TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A0D2PJ441e-175A0A0D2PJ44_GOSRA; Uncharacterized protein
STRINGGorai.001G013000.11e-163(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.21e-48MYB_related family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]