PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G013000.1
Common NameB456_001G013000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 272aa    MW: 30031.1 Da    PI: 10.0522
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G013000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.7e-13556147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                        +++WT+eE+e l  +v+++G+g+Wk+I r          R+  ++k++w+++
  Gorai.001G013000.1  5 KQKWTAEEEEALRAGVAKYGKGNWKLIQRDPElspflFARSNIDLKDKWRNL 56
                        79****************************99999*977**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.901157IPR017930Myb domain
SuperFamilySSF466891.0E-15258IPR009057Homeodomain-like
SMARTSM007174.2E-8459IPR001005SANT/Myb domain
PfamPF002499.4E-10556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-14556IPR009057Homeodomain-like
CDDcd116601.69E-20656No hitNo description
SuperFamilySSF467855.99E-15105184IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.981105173IPR005818Linker histone H1/H5, domain H15
SMARTSM005265.8E-15105168IPR005818Linker histone H1/H5, domain H15
PfamPF005386.3E-11108167IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.1E-15108175IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGNPKQKWTA EEEEALRAGV AKYGKGNWKL IQRDPELSPF LFARSNIDLK DKWRNLSGGP  60
GGHGSREKSR ASKPKPSSDG SQGAVVVKQT ALPKPLVDDS SKSFAPNRYN EMIIEAISAL  120
KEPNGSDNRA IVGYIEQRQE VPQSFKKQLC SRLKRLVAIE KLEKVQNRYK IRKDETFGMK  180
TASPKQKGTK LKQSQNPGHK TCDAVEEASM TAAYLIAEAE NKSFVAAEAV KEAERVSKMA  240
EDADSLLQLA KEIFETCNVS ATLHFFSSSR V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477629.10.0PREDICTED: telomere repeat-binding factor 4-like
RefseqXP_016719734.10.0PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A0D2N3830.0A0A0D2N383_GOSRA; Uncharacterized protein
STRINGGorai.001G013000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.21e-62MYB_related family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]