PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G009900.1
Common NameB456_001G009900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 393aa    MW: 43675.9 Da    PI: 7.396
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G009900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.2e-08137157526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C++f++ G C+ Gd+C FaHg
  Gorai.001G009900.1 137 ACPDFRK-GNCRKGDSCEFAHG 157
                         7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0884121IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6132158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.08133159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-6136159IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-6137157IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.798167191IPR000571Zinc finger, CCCH-type
SMARTSM003566.4167190IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MMLGETHRPN PTVHVPPWPD LDDDQTDVVY SPIHYNATDN NLNSNGNPFY LHEALSALQR  60
YLPSNGPDVE LDSEFPGLDS PDSPVDAYSC DHFRMYEFKI RRCARGRSHD WTECPYAHPG  120
EKARRRDPRK YHYSGTACPD FRKGNCRKGD SCEFAHGVFE CWLHPARYRT QPCKDGSGCR  180
RRVCFFAHTP DQLRLVSSTD TYDGSPCGKT LTFWSSPGSG SPPVSPRAES CSSPPVSPMA  240
QSLSRSLGSA SINEMVTSLR NLQLGKGKSW KTQVGCCSPS SPSSFGSPRA AMIRPGFCSL  300
PSTPTRNLTR PGISYPDSWD KACEEEPVME RVESGRDLRA KMFEKLSKEN SLERVNPDQS  360
SGGPDLNWVS DLGKQAMGII VMVDIVLFIK YF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.3550.0flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488220920.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614420.10.0PREDICTED: zinc finger CCCH domain-containing protein 49
SwissprotQ9M0G21e-146C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A0D2LRP50.0A0A0D2LRP5_GOSRA; Uncharacterized protein
STRINGGorai.001G009900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-137C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]