PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G007000.3

Common Name

B456_001G007000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 279aa MW: 30342.9 Da PI: 8.5826

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G007000.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00033	136	174	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Gorai.001G007000.3 136 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 174 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.49	124	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-10	134	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.27E-6	134	178	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.1E-7	138	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MIIITKRGGL VGEEQATALQ HQASTGNNNI MKQENYVYGH ANEDYHHHHH HHYQGSKATT 60 NWSMATASSS PKSCVTTSFN NNMLDFSSNI KVDTATRQHP PLMDPSPECN SSTASGGALK 120 KTRVQPSATQ STFKVRKEKL GDRITALHQL VSPFGKTDTA SVLLEAIGYI RFLQSQIEAL 180 SLPYLGSDGS SGNMRQQQQS VQGERNCIFP EDPGQLLNEK CMKKRKGGPA DLQDSNEEPK 240 KNLKSRGLCL VPISCTLQVG SDNGADYWAP PSLGGGFR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964409	1e-129	JX964409.1 Gossypium hirsutum clone NBRI_TRANS-678 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468959.1	0.0	PREDICTED: transcription factor bHLH68-like isoform X1
Swissprot	Q8S3D1	1e-79	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A0D2PT33	0.0	A0A0D2PT33_GOSRA; Uncharacterized protein
STRING	Gorai.001G007000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-82	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G007000.3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]